EY685707

Overview
NameEY685707
Unique NameEY685707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_XANP2 (50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GS++NGRDS  + LGVK+FGG+ VIPGNIIVRQRGT++HPG  VGMGKDHTL+AL EG+V F+  K + R +V V P
Sbjct:    2 AHKKAGGSSRNGRDSDGRRLGVKRFGGQDVIPGNIIVRQRGTKWHPGTNVGMGKDHTLFALVEGKVTFQT-KANDRTYVSVLP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SACD2 (50S ribosomal protein L27 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            A KK  GST+NGRDS+ K LGVK+FGGE V  G+IIVRQRGTR HPG+ VG+GKDHTL+A  EG VKFE    + RK+V +
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGETVTAGSIIVRQRGTRVHPGENVGLGKDHTLFAKVEGAVKFEVKGPNNRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_PROMH (50S ribosomal protein L27 OS=Proteus mirabilis (strain HI4320) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFALADGKVKFEVKGPNNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_BARBK (50S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPG+ VG+GKDHTL++L  G V F + K++ R +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIIRQRGTRWHPGENVGIGKDHTLFSLANGTVSF-RTKVNNRSYVSVIP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_AZOC5 (50S ribosomal protein L27 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GS++NGRDS  + LGVKKFGG+ V+ GNIIVRQRGT++HPG  VGMGKDHTL+AL EGRV+F + K + R +V V P
Sbjct:    2 AHKKAGGSSRNGRDSDGRRLGVKKFGGQAVVSGNIIVRQRGTKWHPGTNVGMGKDHTLFALVEGRVEF-RTKANDRTYVSVVP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_AGRRK (50S ribosomal protein L27 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 467
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT +HPG  VG+GKDHT++AL  G V + + K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSQSKRLGVKKFGGEAVIAGNIIVRQRGTEWHPGTNVGLGKDHTIFALTAGNVNY-RTKANGRVYVSVMPK 84          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SULNB (50S ribosomal protein L27 OS=Sulfurovum sp. (strain NBC37-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GST+N RDS  + LGVKKFGGE+VIPGNII+RQRGT+ HPG+ VGMGKDHT++A+ EG VKFE    S +K V V P
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEKVIPGNIIIRQRGTKVHPGNGVGMGKDHTIFAMVEGVVKFENRSRS-QKRVSVVP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_PSEA6 (50S ribosomal protein L27 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            A KK  GST NGRDS+ K LGVK++GGE V+ GNIIVRQRGTRFH G+ +G+GKDHTL+AL +G+V+FE      RK+V +
Sbjct:    2 AHKKAGGSTNNGRDSESKRLGVKRYGGESVLAGNIIVRQRGTRFHAGNNMGIGKDHTLFALSDGKVQFEVKGPKNRKFVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_PELUB (50S ribosomal protein L27 OS=Pelagibacter ubique GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            ATKK  GS++NGRDS  + LGVKK+GGE VIPGNIIVRQRGT+  PG+ VGMGKDH+++++ EG+V F+K K S R +V V+P
Sbjct:    2 ATKKAGGSSRNGRDSAGRRLGVKKYGGEVVIPGNIIVRQRGTKIFPGENVGMGKDHSIFSVVEGKVVFKKGK-SDRTFVSVKP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_LEGPL (50S ribosomal protein L27 OS=Legionella pneumophila (strain Lens) GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 470
            A KK  GST+NGRDS PK LGVK+FGG+ V  G IIVRQRGTRFHPG  VG G+DHTLYAL EG V+F       RK+V + P++
Sbjct:    2 AHKKAGGSTRNGRDSNPKYLGVKRFGGQFVNAGEIIVRQRGTRFHPGPGVGCGRDHTLYALVEGLVQFTTKGEKNRKYVTILPEQ 86          
The following BLAST results are available for this feature:
BLAST of EY685707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_XANP29.780e-2363.8650S ribosomal protein L27 OS=Xanthobacter autotrop... [more]
RL27_SACD29.780e-2364.2050S ribosomal protein L27 OS=Saccharophagus degrad... [more]
RL27_PROMH9.780e-2360.9850S ribosomal protein L27 OS=Proteus mirabilis (st... [more]
RL27_BARBK9.780e-2362.6550S ribosomal protein L27 OS=Bartonella bacillifor... [more]
RL27_AZOC59.780e-2363.8650S ribosomal protein L27 OS=Azorhizobium caulinod... [more]
RL27_AGRRK9.780e-2363.1050S ribosomal protein L27 OS=Agrobacterium radioba... [more]
RL27_SULNB1.277e-2265.0650S ribosomal protein L27 OS=Sulfurovum sp. (strai... [more]
RL27_PSEA61.277e-2261.7350S ribosomal protein L27 OS=Pseudoalteromonas atl... [more]
RL27_PELUB1.277e-2262.6550S ribosomal protein L27 OS=Pelagibacter ubique G... [more]
RL27_LEGPL1.277e-2262.3550S ribosomal protein L27 OS=Legionella pneumophil... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685707 ID=EY685707; Name=EY685707; organism=Citrus sinensis; type=EST; length=707bp
CCACGCGTCCGATCACCACATCGACAAACAATCACTTGAACTGAGGAACT
CGAATTGCATATTGAGAGGATAAATTACCAAAAATGAGCATGTTTAATTT
CGCAAATACGCTATGCAAGCGATTGAATGTGAAAGAACTGGTTAGTAATG
TTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGATTAAGCTTG
ATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACCAAGAACGG
ACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGGTGGTGAGA
GGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACACGCTTTCAT
CCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTATGCCCTTAA
GGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCGCAAGTGGG
TGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTATATGCAAAT
GCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCATAAAACCC
CATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTTTCTTCTTC
CTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAAACTGTGTA
CCAGAATTGAATATAAATTTTCCTACTGTTTTTCCTTGTTTGAAAAAAAA
AAAAAAA
back to top