EY685707

Overview
NameEY685707
Unique NameEY685707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_NEOSM (50S ribosomal protein L27 OS=Neorickettsia sennetsu (strain Miyayama) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GS+ NGRDS  K LGVKKFG ERVIPG+IIVRQRGT+FHPG  VGMG DHT++A+K G V F    L GR++VHV
Sbjct:    2 ATKKAGGSSSNGRDSIGKRLGVKKFGSERVIPGDIIVRQRGTKFHPGRNVGMGSDHTIFAMKSGSVSFSV-GLRGRRFVHV 81          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SINMW (50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 467
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHT++AL  G V F K K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGENVIAGNIIVRQRGTKWHPGANVGLGKDHTIFALTAGNVDFRK-KANGRVYVSVMPK 84          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_MESSB (50S ribosomal protein L27 OS=Mesorhizobium sp. (strain BNC1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GS++NGRDS+ K LGVKKFGGE V+ GNII+RQRGT++HPG  VGMGKDHTL+AL+ G V F K K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIIRQRGTKWHPGANVGMGKDHTLFALQAGAVSFAK-KANGRTYVSVNP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_HAES2 (50S ribosomal protein L27 OS=Haemophilus somnus (strain 2336) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMGKDHTL+A  +G+VKFE      RK+V V
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSV 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_HAES1 (50S ribosomal protein L27 OS=Haemophilus somnus (strain 129Pt) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMGKDHTL+A  +G+VKFE      RK+V V
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSV 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_ACTPJ (50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_ACTP7 (50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_ACTP2 (50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_THIDA (50S ribosomal protein L27 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GS++NGRDS+ K LGVK+FGG+ V+ GNI+VRQRGT+FHPGD VG+GKDHTL+A  +G VKFE    + RK V +EP
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKRFGGQVVLAGNILVRQRGTQFHPGDNVGIGKDHTLFAKTDGTVKFEIKGAARRKVVRIEP 84          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_RHIME (50S ribosomal protein L27 OS=Rhizobium meliloti GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 467
            A KK  GS++NGRDS+ K LGVKKFGGE VIPGNIIVRQRGT++H G  VG+GKDHT++AL  G V F K K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIIVRQRGTKWHAGANVGLGKDHTIFALTTGNVDFRK-KANGRVYVSVMPK 84          
The following BLAST results are available for this feature:
BLAST of EY685707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_NEOSM6.773e-2467.9050S ribosomal protein L27 OS=Neorickettsia sennets... [more]
RL27_SINMW8.845e-2465.4850S ribosomal protein L27 OS=Sinorhizobium medicae... [more]
RL27_MESSB8.845e-2465.0650S ribosomal protein L27 OS=Mesorhizobium sp. (st... [more]
RL27_HAES28.845e-2465.4350S ribosomal protein L27 OS=Haemophilus somnus (s... [more]
RL27_HAES18.845e-2465.4350S ribosomal protein L27 OS=Haemophilus somnus (s... [more]
RL27_ACTPJ8.845e-2464.2050S ribosomal protein L27 OS=Actinobacillus pleuro... [more]
RL27_ACTP78.845e-2464.2050S ribosomal protein L27 OS=Actinobacillus pleuro... [more]
RL27_ACTP28.845e-2464.2050S ribosomal protein L27 OS=Actinobacillus pleuro... [more]
RL27_THIDA1.155e-2362.6550S ribosomal protein L27 OS=Thiobacillus denitrif... [more]
RL27_RHIME1.155e-2365.4850S ribosomal protein L27 OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685707 ID=EY685707; Name=EY685707; organism=Citrus sinensis; type=EST; length=707bp
CCACGCGTCCGATCACCACATCGACAAACAATCACTTGAACTGAGGAACT
CGAATTGCATATTGAGAGGATAAATTACCAAAAATGAGCATGTTTAATTT
CGCAAATACGCTATGCAAGCGATTGAATGTGAAAGAACTGGTTAGTAATG
TTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGATTAAGCTTG
ATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACCAAGAACGG
ACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGGTGGTGAGA
GGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACACGCTTTCAT
CCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTATGCCCTTAA
GGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCGCAAGTGGG
TGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTATATGCAAAT
GCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCATAAAACCC
CATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTTTCTTCTTC
CTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAAACTGTGTA
CCAGAATTGAATATAAATTTTCCTACTGTTTTTCCTTGTTTGAAAAAAAA
AAAAAAA
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