EY685707

Overview
NameEY685707
Unique NameEY685707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_RHILO (50S ribosomal protein L27 OS=Rhizobium loti GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GS++NGRDS  K LGVKKFGGE VIPGNII+RQRGT +HPG  VGMG DHTL+AL+ G V F K K +GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSHSKRLGVKKFGGEAVIPGNIIIRQRGTTWHPGVNVGMGTDHTLFALESGAVTFNK-KANGRTYVSVNP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_PHOPR (50S ribosomal protein L27 OS=Photobacterium profundum GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL +G+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTNNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGLGKDHTLFALTDGKVKFEVKGPKNRKFVTIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_HAEPS (50S ribosomal protein L27 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_HAEDU (50S ribosomal protein L27 OS=Haemophilus ducreyi GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMGKDHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGKDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHEB9 (50S ribosomal protein L27 OS=Shewanella baltica (strain OS195) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGANNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHEB8 (50S ribosomal protein L27 OS=Shewanella baltica (strain OS185) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGANNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHEB5 (50S ribosomal protein L27 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGANNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHEB2 (50S ribosomal protein L27 OS=Shewanella baltica (strain OS223) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGANNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_MARMM (50S ribosomal protein L27 OS=Maricaulis maris (strain MCS10) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GS++NGRDS  + LGVKK+GG+ VIPGNIIVRQRGT+ +PG  VGMGKDHTL+AL EGRV F K K  G+ +V VEP
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKYGGQEVIPGNIIVRQRGTKVNPGANVGMGKDHTLFALTEGRVVFAK-KSGGKAFVSVEP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_COLP3 (50S ribosomal protein L27 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            A KK AGST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH G  +G+GKDHTL+AL +G+V+FE      RK+V +
Sbjct:    2 AHKKAAGSTRNGRDSEAKRLGVKRFGGESVLAGNIIVRQRGTRFHAGSNMGIGKDHTLFALSDGKVQFEVKGPKSRKFVSI 82          
The following BLAST results are available for this feature:
BLAST of EY685707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_RHILO1.155e-2366.2750S ribosomal protein L27 OS=Rhizobium loti GN=rpm... [more]
RL27_PHOPR1.155e-2364.6350S ribosomal protein L27 OS=Photobacterium profun... [more]
RL27_HAEPS1.155e-2364.2050S ribosomal protein L27 OS=Haemophilus parasuis ... [more]
RL27_HAEDU1.155e-2364.2050S ribosomal protein L27 OS=Haemophilus ducreyi G... [more]
RL27_SHEB91.509e-2362.2050S ribosomal protein L27 OS=Shewanella baltica (s... [more]
RL27_SHEB81.509e-2362.2050S ribosomal protein L27 OS=Shewanella baltica (s... [more]
RL27_SHEB51.509e-2362.2050S ribosomal protein L27 OS=Shewanella baltica (s... [more]
RL27_SHEB21.509e-2362.2050S ribosomal protein L27 OS=Shewanella baltica (s... [more]
RL27_MARMM1.509e-2366.2750S ribosomal protein L27 OS=Maricaulis maris (str... [more]
RL27_COLP31.509e-2364.2050S ribosomal protein L27 OS=Colwellia psychreryth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685707 ID=EY685707; Name=EY685707; organism=Citrus sinensis; type=EST; length=707bp
CCACGCGTCCGATCACCACATCGACAAACAATCACTTGAACTGAGGAACT
CGAATTGCATATTGAGAGGATAAATTACCAAAAATGAGCATGTTTAATTT
CGCAAATACGCTATGCAAGCGATTGAATGTGAAAGAACTGGTTAGTAATG
TTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGATTAAGCTTG
ATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACCAAGAACGG
ACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGGTGGTGAGA
GGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACACGCTTTCAT
CCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTATGCCCTTAA
GGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCGCAAGTGGG
TGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTATATGCAAAT
GCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCATAAAACCC
CATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTTTCTTCTTC
CTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAAACTGTGTA
CCAGAATTGAATATAAATTTTCCTACTGTTTTTCCTTGTTTGAAAAAAAA
AAAAAAA
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