EY685707

Overview
NameEY685707
Unique NameEY685707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHEON (50S ribosomal protein L27 OS=Shewanella oneidensis GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPNNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_PASMU (50S ribosomal protein L27 OS=Pasteurella multocida GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGRDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_MANSM (50S ribosomal protein L27 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGRDHTLFATADGKVKFEVKGEKSRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_ACTSZ (50S ribosomal protein L27 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGRDHTLFATADGKVKFEVKGEKSRKYVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHESH (50S ribosomal protein L27 OS=Shewanella sediminis (strain HAW-EB3) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPKNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHEPW (50S ribosomal protein L27 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPQNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHEPA (50S ribosomal protein L27 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPQNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHELP (50S ribosomal protein L27 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPKNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SHEHH (50S ribosomal protein L27 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPQNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_PSEHT (50S ribosomal protein L27 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            A KK AGST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGTRFHPG  VG+GKDHT++A  +G+V+FE+     RK+V +
Sbjct:    2 AHKKAAGSTRNGRDSESKRLGVKRFGGESVLAGSIIVRQRGTRFHPGTNVGIGKDHTIFAKADGKVQFEQKGPLNRKYVTI 82          
The following BLAST results are available for this feature:
BLAST of EY685707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_SHEON2.574e-2362.2050S ribosomal protein L27 OS=Shewanella oneidensis... [more]
RL27_PASMU2.574e-2362.9650S ribosomal protein L27 OS=Pasteurella multocida... [more]
RL27_MANSM2.574e-2362.9650S ribosomal protein L27 OS=Mannheimia succinicip... [more]
RL27_ACTSZ2.574e-2362.9650S ribosomal protein L27 OS=Actinobacillus succin... [more]
RL27_SHESH3.361e-2362.2050S ribosomal protein L27 OS=Shewanella sediminis ... [more]
RL27_SHEPW3.361e-2362.2050S ribosomal protein L27 OS=Shewanella piezotoler... [more]
RL27_SHEPA3.361e-2362.2050S ribosomal protein L27 OS=Shewanella pealeana (... [more]
RL27_SHELP3.361e-2362.2050S ribosomal protein L27 OS=Shewanella loihica (s... [more]
RL27_SHEHH3.361e-2362.2050S ribosomal protein L27 OS=Shewanella halifaxens... [more]
RL27_PSEHT3.361e-2362.9650S ribosomal protein L27 OS=Pseudoalteromonas hal... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685707 ID=EY685707; Name=EY685707; organism=Citrus sinensis; type=EST; length=707bp
CCACGCGTCCGATCACCACATCGACAAACAATCACTTGAACTGAGGAACT
CGAATTGCATATTGAGAGGATAAATTACCAAAAATGAGCATGTTTAATTT
CGCAAATACGCTATGCAAGCGATTGAATGTGAAAGAACTGGTTAGTAATG
TTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGATTAAGCTTG
ATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACCAAGAACGG
ACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGGTGGTGAGA
GGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACACGCTTTCAT
CCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTATGCCCTTAA
GGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCGCAAGTGGG
TGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTATATGCAAAT
GCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCATAAAACCC
CATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTTTCTTCTTC
CTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAAACTGTGTA
CCAGAATTGAATATAAATTTTCCTACTGTTTTTCCTTGTTTGAAAAAAAA
AAAAAAA
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