EY685485

Overview
NameEY685485
Unique NameEY685485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.631e-23
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RL+ +    GYKR   NQ  +T+L+++EGV ++ EV +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF SNLPP ++G  +RV ++P+ +
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.923e-22
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RL+ +    GYKR   NQ  +T+L++IEGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP  ++G  +RV ++P+ I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_MOUSE (60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.923e-22
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RL+ +    GYKR   NQ  +T+L++IEGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP  ++G  +RV ++P+ I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_CAEEL (60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.923e-22
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKA--KTKKNG----SHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RLYV+    G+KR    Q  +TSL+++EGV  KE+  +Y GKR+ Y+YKA  KT K G    +  R IWGK+ R HGN+G VRAKF  N+PP+++G  +RV ++P+ I
Sbjct:   17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.511e-22
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RL+ +    GYKR   NQ  +T+L++IEGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP  ++G  +RV ++P+ I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_MACFA (60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.511e-22
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RL+ +    GYKR   NQ  +T+L++IEGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP  ++G  +RV ++P+ I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_HUMAN (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.511e-22
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RL+ +    GYKR   NQ  +T+L++IEGV  ++E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP  ++G  +RV ++P+ I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of EY685485 vs. ExPASy Swiss-Prot
Match: RL35A_BOVIN (60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.280e-22
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   64 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPTSVGDTVRVFMHPNEI 369
            RL+ +    GYKR   NQ  +T+L++IEGV  ++E  +Y GKR AY+YKAK          +  R IWGK+ R+HGNSG+VRAKF+SNLP  ++G  +RV ++P+ I
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of EY685485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL35A_ICTPU8.631e-2347.6660S ribosomal protein L35a OS=Ictalurus punctatus ... [more]
RL35A_RAT1.923e-2247.6660S ribosomal protein L35a OS=Rattus norvegicus GN... [more]
RL35A_MOUSE1.923e-2247.6660S ribosomal protein L35a OS=Mus musculus GN=Rpl3... [more]
RL35A_CAEEL1.923e-2247.2260S ribosomal protein L35a OS=Caenorhabditis elega... [more]
RL35A_PONAB2.511e-2247.6660S ribosomal protein L35a OS=Pongo abelii GN=RPL3... [more]
RL35A_MACFA2.511e-2247.6660S ribosomal protein L35a OS=Macaca fascicularis ... [more]
RL35A_HUMAN2.511e-2247.6660S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
RL35A_BOVIN3.280e-2246.7360S ribosomal protein L35a OS=Bos taurus GN=RPL35A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-H04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685485 ID=EY685485; Name=EY685485; organism=Citrus sinensis; type=EST; length=906bp
GCAAGCAGGTGGGCAGAGCTTCAATCATAAACAATGGTGAAGGGCAGGCA
AGGCGAGCGCGTCAGACTCTATGTTCGAGGAACAATTCTGGGATACAAAA
GGTCAAAATCAAACCAGTATCCAAACACATCACTGATTCAGATCGAGGGA
GTGAACACAAAGGAAGAGGTGGCGTGGTACTGCGGCAAGCGTTTGGCTTA
CATTTACAAGGCCAAGACTAAGAAGAACGGGAGCCACTATCGTTGCATTT
GGGGAAAAGTTGCCAGATCTCACGGTAACAGCGGCGTCGTTCGTGCCAAG
TTCAAGTCCAATCTCCCTCCAACATCCGTGGGAGATACAGTTAGGGTTTT
CATGCATCCCAACGAGATATAGAGCAGCCTGGGTTCAAAAAACTACTAGG
TGGGGGGGGGGAAGCAACATCTGAATCTGAGATCTGTACATGCACACTGA
TCGTCTCATAGGTTCAAGTCCCCGAGCACCCTAACAAACATAGCACGAGA
GTCCAAACGCAACAAAAGCAGAAGCTTAAGCGCACACCAACAACAGGTCA
ACCCAGCACCGCCCCCACAAGGGCCACCGCCGACAAACAAGGCCCCCATC
CCAAAAAAGAACCGCAAGCGAGCGGAGGACGAGGAAAAGAGAGAAGAGGA
GGAGGGAGAAAAAAATACAAGAACCAACCACCAGGGAAAGAAAAGCTACA
CCGAGCACAACTCGACGCAGAAAGCGCACCCAGCCACAAGGGCACAAGCG
CCGAAACACCCGACAGACAGACGAACAAGCACCAGACGACAAGGAGAGCA
CCGCACGAGAACAGCCGCAACACCCCACGAAGACAAAGGACAGGCGACAC
CCCGACAGACGGAGCACCAACAGCGGGCACCAAAGCATGAAGGAAACAGG
GACCCC
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