EY685468

Overview
NameEY685468
Unique NameEY685468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1020
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECOSE (Recombination-associated protein rdgC OS=Escherichia coli (strain SE11) GN=rdgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECOLU (Recombination-associated protein rdgC OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECOLI (Recombination-associated protein rdgC OS=Escherichia coli (strain K12) GN=rdgC PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECOLC (Recombination-associated protein rdgC OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rdgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECOL6 (Recombination-associated protein rdgC OS=Escherichia coli O6 GN=rdgC PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECOL5 (Recombination-associated protein rdgC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rdgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECOHS (Recombination-associated protein rdgC OS=Escherichia coli O9:H4 (strain HS) GN=rdgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECODH (Recombination-associated protein rdgC OS=Escherichia coli (strain K12 / DH10B) GN=rdgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECOBW (Recombination-associated protein rdgC OS=Escherichia coli (strain K12 / BW2952) GN=rdgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
[Close]
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_ECO8A (Recombination-associated protein rdgC OS=Escherichia coli O8 (strain IAI1) GN=rdgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.606e-14
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -3 
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L        LA+    PC SQ++   G+V P G   DA L HV+   ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDA-LTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSR 122
The following BLAST results are available for this feature:
BLAST of EY685468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RDGC_ECOSE6.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOLU6.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOLI6.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOLC6.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOL66.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOL56.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOHS6.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECODH6.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECOBW6.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]
RDGC_ECO8A6.606e-1439.09Recombination-associated protein rdgC OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-F05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685468 ID=EY685468; Name=EY685468; organism=Citrus sinensis; type=EST; length=1020bp
GACGGATGAACGCGCGCGGCAGGAAGGCCTGGATGATTTCATCCTTGATC
TGGTCGCGTTCCTTTTTGTAGACCTTGCGCATTTGCTCGGCTTCGATCTC
TTCGACCTTTTCCTTCACCGCGTCACGCACTACGCTGCCCGGCAGGATAC
GTTCTTCCTTGCGCGCAGCGATCAGCAGGAAATCACCGCTGACGTGCACC
AGGGGCGCGTCTTCGCCTTTACCGAAAGGGGCGACGAAACCGTAAGTGGT
CAACTCCTGGCTTGCACAAGGGCGCGCCAGTTTGGTGGCCAGTGCAGAAT
TCCAACGCCTCACGCTCAACACGGAAGATCTTGGGTCAGGCCATAGATAA
CCTAGTTTTCTAGCACAATGCAGTGCCTCTCAAAAAGAGAAAAGAGAAGG
AGGAGAGAAGAGGCGCGGGCGGGGAGAGAACCGCCAGCCGCCCCGGGTCC
CCAGGAAAGCCTGACCCCAGCCCGCGAACACCCCGCTTGCCCAAACATGG
GCCGACGAACTACAGAAAACCGCACCCAGGGCAGAGACCACAAAAACGAC
GAACAAAAAAAAAAAAAACAAACAAAGAAAAACAAAAACAAAAAAAGAGA
AAAAAAAAGAACGATCAGGGCCGCCGGAGCCAGGTGAAAGACGGCCACGT
CGGCACCTCCCGGGCCGGAGACACCGGGACCACGCGCCCAACCAGCAGTA
GAACGAATCAGAGACAGGAGGATACAGCGCGTGTGAAGCAGACGAAAGAC
AGTTACGCCCCACGAAAGGAAGCGACTACCCGGCCAGCCCACGACCATGA
CGAAGCACGAAAGGGAGAAGAGGAGGAGGAAGAGAGGAAGGGGAAGGAGA
GGAAGCGGCCAAACAGACAAAGAGAACAGCACCCAGAGCCCGGCCAAGGA
ACGGGAGGACGGACAGAACAAGAAACAGAATGCCAGATGTGACAACGAGA
CAATGGCAGGGCAAAAGAGAAAGACCAACAGAGGCACGAAAAGAAAGATA
GAGTCTGGAGGCAACAAGAC
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