EY685468

Overview
NameEY685468
Unique NameEY685468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1020
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_YERPG (Recombination-associated protein rdgC OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rdgC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.625e-12
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = -3
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   LS       L+     PC SQ++   G+V+P G   DA L H     ++I  RKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REVSLSADEMEKQLSAFSFTPCGSQDMAKTGWVSPMGSHSDA-LTHTVNGQIVICVRKEEKILPSPVIKQELQDKIERLEGEQHRKLKKTEKDSLKDEVLHSLLPRAFSR 122          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_SHEON (Recombination-associated protein rdgC OS=Shewanella oneidensis GN=rdgC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.734e-12
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = -3
Query:    2 SALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 298
            +ALA     PC SQ+++ +GF    GK + + LVH + +  LI   KEE+ILP  V+++           E+ RK+ KKE+D +KDEII + LPRAF R
Sbjct:   24 TALADFTFSPCGSQDVSKFGFSNALGK-KGSTLVHSANNRHLICVTKEEKILPAQVIKESLEEKVAQIEDEENRKLAKKEKDALKDEIITSLLPRAFSR 121          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_PSYIN (Recombination-associated protein rdgC OS=Psychromonas ingrahamii (strain 37) GN=rdgC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.734e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = -3
Query:    2 RPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 274
            +PC SQ+++  G+V P GK   +   H++G  +LI  +KEE++LP  V++D           EQ R + KKE+D +K+EI+   LPRAF R
Sbjct:   32 KPCGSQDISKLGWVFPMGKS-GSMYTHIAGKQILICLKKEEKMLPAGVIKDQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFSR 121          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_HALHL (Recombination-associated protein rdgC OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rdgC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.734e-12
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = -3
Query:    2 LATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 292
            LA     PC + E +  GFV P G G  APLVH +   LL   ++E ++LP +V+R+            + RKV K+ERD+I+DE++   +PRAF R
Sbjct:   26 LAALAFTPCGALEPSRSGFVPPLGPG--APLVHAAAGSLLFCLQEETKLLPAAVIREAMDERIGAVEAAEHRKVRKRERDRIRDEVVTDLMPRAFSR 120          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_SODGM (Recombination-associated protein rdgC OS=Sodalis glossinidius (strain morsitans) GN=rdgC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.076e-12
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = -3
Query:    2 LSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 319
            LSV +    L+     PC SQ++   G+V P G   DA L H     +L+  RKEE+ILP SVV+            +Q RK+ K ++D +KDE++   +PRAF R
Sbjct:   18 LSVEQIEQQLSAFAFTPCGSQDMAKSGWVPPMGAKSDA-LTHSIPGHVLLCLRKEEKILPSSVVKQELEGKISKLENDQSRKLRKTDKDALKDELLHQLMPRAFSR 122          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_SERP5 (Recombination-associated protein rdgC OS=Serratia proteamaculans (strain 568) GN=rdgC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.055e-11
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = -3
Query:    2 RSSVLSVRRWNSALATKLARPCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 331
            R   L+       L+     PC SQ++   G+V+P G   ++ L H     ++I ARKEE+ILP  V++            EQ RK+ K E+D +KDE++ + LPRAF R
Sbjct:   14 REVALNADEMEKQLSAFAFTPCGSQDMAKTGWVSPMGSHSES-LTHAVNGQIVICARKEEKILPSPVIKQELQAKIERLEGEQHRKLKKTEKDALKDEVLHSLLPRAFSR 122          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_VIBPA (Recombination-associated protein rdgC OS=Vibrio parahaemolyticus GN=rdgC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.377e-11
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = -3
Query:    2 LATKLAR----PCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 292
            L T+LA     PC SQ+   +G+V+  G+  D  + HVS + +LI A+KEE++LP SV+++           ++ R + KKE+D +KD+I+   LPRAF R
Sbjct:   22 LETQLAEFRFTPCGSQDKQKFGWVSAMGRHGDM-MTHVSENRILICAKKEEKMLPASVIKESLNAKVDAMEAQEGRPLKKKEKDNLKDDIVMDLLPRAFSR 121          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_SHESH (Recombination-associated protein rdgC OS=Shewanella sediminis (strain HAW-EB3) GN=rdgC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.799e-11
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = -3
Query:    2 PCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 271
            PC+SQ+++ +GF    GK +   LVH + +  LI A KEE+ILP  V+++           E+ RK+ KKE+D +K+EI+   LPRAF R
Sbjct:   33 PCSSQDISKFGFSNALGK-QGQTLVHSASERHLICATKEEKILPSQVIKEALEDKVAQIEAEEDRKLAKKEKDAMKEEIVMTLLPRAFTR 121          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_VIBVY (Recombination-associated protein rdgC OS=Vibrio vulnificus (strain YJ016) GN=rdgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.234e-11
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = -3
Query:    2 PCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 271
            PC SQ+   +G+V+  G+  D  + HVS D +LI A+KEE++LP SV+++           ++ R + KKE++ +K+EII   LPRAF R
Sbjct:   33 PCGSQDKQKFGWVSAMGRHGDM-MTHVSEDRILICAKKEEKMLPASVIKESLNTKVEAMEAQEGRPLKKKEKETLKEEIIIDLLPRAFSR 121          
BLAST of EY685468 vs. ExPASy Swiss-Prot
Match: RDGC_VIBVU (Recombination-associated protein rdgC OS=Vibrio vulnificus GN=rdgC PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.234e-11
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = -3
Query:    2 PCASQELTTYGFVAPFGKGEDAPLVHVSGDFLLIAARKEERILPGSVVRDXXXXXXXXXXXEQMRKVYKKERDQIKDEIIQAFLPRAFIR 271
            PC SQ+   +G+V+  G+  D  + HVS D +LI A+KEE++LP SV+++           ++ R + KKE++ +K+EII   LPRAF R
Sbjct:   33 PCGSQDKQKFGWVSAMGRHGDM-MTHVSEDRILICAKKEEKMLPASVIKESLNAKVEAMEAQEGRPLKKKEKETLKEEIIIDLLPRAFSR 121          
The following BLAST results are available for this feature:
BLAST of EY685468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RDGC_YERPG3.625e-1237.27Recombination-associated protein rdgC OS=Yersinia ... [more]
RDGC_SHEON4.734e-1241.41Recombination-associated protein rdgC OS=Shewanell... [more]
RDGC_PSYIN4.734e-1239.56Recombination-associated protein rdgC OS=Psychromo... [more]
RDGC_HALHL4.734e-1239.18Recombination-associated protein rdgC OS=Halorhodo... [more]
RDGC_SODGM8.076e-1237.74Recombination-associated protein rdgC OS=Sodalis g... [more]
RDGC_SERP51.055e-1135.45Recombination-associated protein rdgC OS=Serratia ... [more]
RDGC_VIBPA1.377e-1138.61Recombination-associated protein rdgC OS=Vibrio pa... [more]
RDGC_SHESH1.799e-1141.11Recombination-associated protein rdgC OS=Shewanell... [more]
RDGC_VIBVY5.234e-1140.00Recombination-associated protein rdgC OS=Vibrio vu... [more]
RDGC_VIBVU5.234e-1140.00Recombination-associated protein rdgC OS=Vibrio vu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-F05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685468 ID=EY685468; Name=EY685468; organism=Citrus sinensis; type=EST; length=1020bp
GACGGATGAACGCGCGCGGCAGGAAGGCCTGGATGATTTCATCCTTGATC
TGGTCGCGTTCCTTTTTGTAGACCTTGCGCATTTGCTCGGCTTCGATCTC
TTCGACCTTTTCCTTCACCGCGTCACGCACTACGCTGCCCGGCAGGATAC
GTTCTTCCTTGCGCGCAGCGATCAGCAGGAAATCACCGCTGACGTGCACC
AGGGGCGCGTCTTCGCCTTTACCGAAAGGGGCGACGAAACCGTAAGTGGT
CAACTCCTGGCTTGCACAAGGGCGCGCCAGTTTGGTGGCCAGTGCAGAAT
TCCAACGCCTCACGCTCAACACGGAAGATCTTGGGTCAGGCCATAGATAA
CCTAGTTTTCTAGCACAATGCAGTGCCTCTCAAAAAGAGAAAAGAGAAGG
AGGAGAGAAGAGGCGCGGGCGGGGAGAGAACCGCCAGCCGCCCCGGGTCC
CCAGGAAAGCCTGACCCCAGCCCGCGAACACCCCGCTTGCCCAAACATGG
GCCGACGAACTACAGAAAACCGCACCCAGGGCAGAGACCACAAAAACGAC
GAACAAAAAAAAAAAAAACAAACAAAGAAAAACAAAAACAAAAAAAGAGA
AAAAAAAAGAACGATCAGGGCCGCCGGAGCCAGGTGAAAGACGGCCACGT
CGGCACCTCCCGGGCCGGAGACACCGGGACCACGCGCCCAACCAGCAGTA
GAACGAATCAGAGACAGGAGGATACAGCGCGTGTGAAGCAGACGAAAGAC
AGTTACGCCCCACGAAAGGAAGCGACTACCCGGCCAGCCCACGACCATGA
CGAAGCACGAAAGGGAGAAGAGGAGGAGGAAGAGAGGAAGGGGAAGGAGA
GGAAGCGGCCAAACAGACAAAGAGAACAGCACCCAGAGCCCGGCCAAGGA
ACGGGAGGACGGACAGAACAAGAAACAGAATGCCAGATGTGACAACGAGA
CAATGGCAGGGCAAAAGAGAAAGACCAACAGAGGCACGAAAAGAAAGATA
GAGTCTGGAGGCAACAAGAC
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