EY685422

Overview
NameEY685422
Unique NameEY685422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB5_CRIGR (Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.375e-81
Identity = 143/161 (88.82%), Postives = 154/161 (95.65%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQ++DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.375e-81
Identity = 143/161 (88.82%), Postives = 154/161 (95.65%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQ++DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.375e-81
Identity = 141/161 (87.58%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYR+LTVPELTQQM+DAKNMM A DPRHGRYLT +AMFRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP G+KMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct:  270 FAPLTSRGSQQYRSLTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGVKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.375e-81
Identity = 142/161 (88.20%), Postives = 154/161 (95.65%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYR+LTVPELTQQM+D KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRSLTVPELTQQMFDGKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.224e-80
Identity = 140/161 (86.96%), Postives = 156/161 (96.89%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQ +DAKNMMCAADPRHGR+LTAS MFRG+MSTKEVDEQM+NVQ KNSSYFVEWIPNN+K++VCDIPP GLKM+STF+GNST+IQEMF+RV EQFTAM++RKAFLHWYTGEGMD+MEFTEAESNMNDLVSEYQQYQ+A+A
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQCFDAKNMMCAADPRHGRFLTASCMFRGRMSTKEVDEQMLNVQTKNSSYFVEWIPNNIKASVCDIPPKGLKMSSTFVGNSTAIQEMFKRVGEQFTAMYKRKAFLHWYTGEGMDDMEFTEAESNMNDLVSEYQQYQEASA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB1_MANSE (Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.224e-80
Identity = 141/161 (87.58%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB1_GLOMM (Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.224e-80
Identity = 141/161 (87.58%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB1_DROME (Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 1.224e-80
Identity = 141/161 (87.58%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB4_MOUSE (Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1 SV=3)

HSP 1 Score: 299.286 bits (765), Expect = 2.088e-80
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB4_MACFA (Tubulin beta-4 chain OS=Macaca fascicularis GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 2.088e-80
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of EY685422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB5_CRIGR9.375e-8188.82Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB... [more]
TBB5_BOVIN9.375e-8188.82Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 S... [more]
TBB4_CAEEL9.375e-8187.58Tubulin beta-4 chain OS=Caenorhabditis elegans GN=... [more]
TBB1_GADMO9.375e-8188.20Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB3_OOMCK1.224e-8086.96Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB1_MANSE1.224e-8087.58Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1[more]
TBB1_GLOMM1.224e-8087.58Tubulin beta-1 chain OS=Glossina morsitans morsita... [more]
TBB1_DROME1.224e-8087.58Tubulin beta-1 chain OS=Drosophila melanogaster GN... [more]
TBB4_MOUSE2.088e-8088.20Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1... [more]
TBB4_MACFA2.088e-8088.20Tubulin beta-4 chain OS=Macaca fascicularis GN=TUB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-A09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685422 ID=EY685422; Name=EY685422; organism=Citrus sinensis; type=EST; length=932bp
GATTCGCTCCCCTCACCTCTCGTGGATCACAGCAATACAGGGCTCTCACT
GTTCCTGAGCTCACTCAACAAATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGATCCTCGACACGGTCGGTACTTGACTGCTTCTGCGATGTTCCGTG
GCAAGATGAGCACCAAGGAGGTTGACGAACAGATGATCAATGTGCAGAAC
AAGAACTCATCATACTTTGTTGAGTGGATTCCCAACAATGTGAAGTCTAC
TGTTTGTGACATCCCTCCGACTGGTCTCAAAATGGCATCCACCTTCATTG
GTAACTCCACCTCAATTCAGGAAATGTTCAGGAGGGTGAGTGAACAGTTC
ACTGCCATGTTCCGCAGAAAGGCTTTTCTGCATTGGTACACTGGAGAGGG
TATGGATGAGATGGAGTTTACCGAGGCAGAGAGCAATATGAACGATCTGG
TTTCTGAGTACCAACAGTATCAAGATGCAACTGCAGAGGAGGATTATGAG
TATGATGATGAAGAGGAACCACAAGAGGAAGTCCTATAATGTTTGATATA
TGATCTGTGGATTGCCGTTCAGTTTGTTCCATGTTAACTTGAGCAGTTGA
TGTCCTCCTTTTTCATTCTTCACGTATTTATCCGCCTTTTAAGGGGGACG
CATTACTTGGGTATTCGTATAAAGGTCATAACAGAAAACATCTTCATCAT
AAAAAGCTATAGAACAAAGACAAAGGCCACGTATACAACAACAACCCACC
ATACACACCACACACCCGAGTGAGAACCATATTAACTAAATTATCTCACT
TAAAATTATTGCAAAACACAACAAAGAAGAAAGAACAACGAAACGACGAC
AACATACAAATGATAGAGAAGCGCCGCCGCGAACGCCCGCCAGCGCCAAA
AAACGCGAAGTACAAACAAACCCACCGAGGCC
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