EY685422

Overview
NameEY685422
Unique NameEY685422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.930e-87
Identity = 154/161 (95.65%), Postives = 160/161 (99.38%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ++NVQNKNSSYFVEWIPNNVKS+VCDIPPTG+KMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  271 FAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 431
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 5.132e-87
Identity = 154/161 (95.65%), Postives = 159/161 (98.76%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYR+LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 6.703e-87
Identity = 156/161 (96.89%), Postives = 158/161 (98.14%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDI P GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 6.703e-87
Identity = 156/161 (96.89%), Postives = 158/161 (98.14%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDI P GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  261 FAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 421
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 6.703e-87
Identity = 155/161 (96.27%), Postives = 159/161 (98.76%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPPTGLKMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V+EYQQYQDATA
Sbjct:  273 FAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPVAEYQQYQDATA 433
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 6.703e-87
Identity = 155/161 (96.27%), Postives = 159/161 (98.76%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPPTGLKMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V+EYQQYQDATA
Sbjct:  273 FAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPVAEYQQYQDATA 433
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 8.754e-87
Identity = 154/161 (95.65%), Postives = 158/161 (98.14%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG+MSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 8.754e-87
Identity = 154/161 (95.65%), Postives = 158/161 (98.14%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB3_ELEIN (Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 8.754e-87
Identity = 154/161 (95.65%), Postives = 159/161 (98.76%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYR+LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GL M+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLTMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 8.754e-87
Identity = 155/161 (96.27%), Postives = 158/161 (98.14%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMA TFIGNSTSIQEMFRRVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYXSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLKMAVTFIGNSTSIQEMFRRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of EY685422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB1_ARATH3.930e-8795.65Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_MAIZE5.132e-8795.65Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB6_ARATH6.703e-8796.89Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_PEA6.703e-8796.89Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB2_SOLTU6.703e-8796.27Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU6.703e-8796.27Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB8_ORYSJ8.754e-8795.65Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_MAIZE8.754e-8795.65Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB3_ELEIN8.754e-8795.65Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 P... [more]
TBB1_ANEPH8.754e-8796.27Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-A09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685422 ID=EY685422; Name=EY685422; organism=Citrus sinensis; type=EST; length=932bp
GATTCGCTCCCCTCACCTCTCGTGGATCACAGCAATACAGGGCTCTCACT
GTTCCTGAGCTCACTCAACAAATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGATCCTCGACACGGTCGGTACTTGACTGCTTCTGCGATGTTCCGTG
GCAAGATGAGCACCAAGGAGGTTGACGAACAGATGATCAATGTGCAGAAC
AAGAACTCATCATACTTTGTTGAGTGGATTCCCAACAATGTGAAGTCTAC
TGTTTGTGACATCCCTCCGACTGGTCTCAAAATGGCATCCACCTTCATTG
GTAACTCCACCTCAATTCAGGAAATGTTCAGGAGGGTGAGTGAACAGTTC
ACTGCCATGTTCCGCAGAAAGGCTTTTCTGCATTGGTACACTGGAGAGGG
TATGGATGAGATGGAGTTTACCGAGGCAGAGAGCAATATGAACGATCTGG
TTTCTGAGTACCAACAGTATCAAGATGCAACTGCAGAGGAGGATTATGAG
TATGATGATGAAGAGGAACCACAAGAGGAAGTCCTATAATGTTTGATATA
TGATCTGTGGATTGCCGTTCAGTTTGTTCCATGTTAACTTGAGCAGTTGA
TGTCCTCCTTTTTCATTCTTCACGTATTTATCCGCCTTTTAAGGGGGACG
CATTACTTGGGTATTCGTATAAAGGTCATAACAGAAAACATCTTCATCAT
AAAAAGCTATAGAACAAAGACAAAGGCCACGTATACAACAACAACCCACC
ATACACACCACACACCCGAGTGAGAACCATATTAACTAAATTATCTCACT
TAAAATTATTGCAAAACACAACAAAGAAGAAAGAACAACGAAACGACGAC
AACATACAAATGATAGAGAAGCGCCGCCGCGAACGCCCGCCAGCGCCAAA
AAACGCGAAGTACAAACAAACCCACCGAGGCC
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