EY685422

Overview
NameEY685422
Unique NameEY685422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.003e-23
Identity = 50/161 (31.06%), Postives = 90/161 (55.90%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 461
            +AP+ S+    + + +V E+T   ++  N M   DP  G+Y+    ++RG + T++V   +  V+NK +   V+W P   K  +C  PP+         +  A   + N+T+I + ++R+ ++F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y
Sbjct:  273 YAPILSKKRATHESNSVSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.228e-23
Identity = 50/163 (30.67%), Postives = 87/163 (53.37%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--------TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +AP+ S     + A +V E+T   ++  N M   DPRHG+Y+    ++RG +   +    +  ++ K +  FV+W P   K  +C  PP          +  A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  272 YAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.828e-23
Identity = 49/163 (30.06%), Postives = 90/163 (55.21%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG--------LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +AP+ S     + A +V E++   ++  + M   DPR+G+Y+    ++RG +  K+V + +  ++ K +  FV+W P   K  +C  PP          +  A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  272 YAPIVSAAKAAHEANSVQEISMSCFEPNSQMVKCDPRNGKYMATCLLYRGDVVPKDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.918e-23
Identity = 51/163 (31.29%), Postives = 90/163 (55.21%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +A + S     +  L+VPE+T   ++  N M   DPR G+Y+    ++RG +  K+V+  +  ++ + S  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  147 YARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 309          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.987e-22
Identity = 52/170 (30.59%), Postives = 92/170 (54.12%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSTVCDIPPTG--------LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 482
            +AP+ SR    +  +TV  +T  ++  KN+M    P  G+Y+    M+RG +  KE  + + N++++ S    FV+W P   K  + +  P          +K +   + N+T+I ++F R++ +F  MF ++AF+HWY GEGM+E EF EA  ++  L  +Y+    +T
Sbjct:  279 YAPVISREKAHHETITVDNITSAVFSEKNIMAKCQPNLGKYMACCLMYRGDIVPKEAQKAVQNIRSEKSRNVSFVDWSPTGFKCGINNQAPVSTKDSEMAEVKKSVCMLSNTTAISQVFSRINHKFDLMFVKRAFVHWYVGEGMEEGEFAEARDDLLALEKDYESVSAST 448          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.595e-22
Identity = 54/162 (33.33%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    6 APLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            AP+ SR    Y    V ELT  +++A NMM   +PR G+Y+ +  M+RG +  KEV + + NV++K +  FV+W P   K  V    PT L        + +   I N+T+I ++F R++++F  ++ ++A++H +  EGM+E EF EA  ++  L  +Y +
Sbjct:  271 APMISRQENYYHENNVAELTSSVFEADNMMAKCNPRDGKYIASCLMYRGDVVNKEVTDAVKNVKSKANIQFVDWSPCAFKIGVNSQKPTVLPDSEFAQVERSCAMISNNTAISQVFERMNDKFDLLYAKRAYVHHFVSEGMEEGEFAEAREDLAALEKDYTE 432          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.426e-22
Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--------TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +AP+ S     + A +V E+T   ++  N M   DPRHG+Y+    ++ G +   +    + +++ K +  FV+W P   K  +C  PP          +  A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA   +  L ++Y++
Sbjct:  272 YAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYGGDVVPNDAHAAVASLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREVLAALEADYEE 434          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.426e-22
Identity = 51/163 (31.29%), Postives = 89/163 (54.60%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ + AF+HWY GEGM+E EF+EA  ++  L  + ++
Sbjct:  272 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEKDCEE 434          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.426e-22
Identity = 48/163 (29.45%), Postives = 87/163 (53.37%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--------TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            ++P+ S     + A +V ++T   ++  N M   DPR+G+Y+    ++RG +  KE    +  ++ K +  FV+W P   K  +C  PP          +  A   + N+T+I E +  +  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  272 YSPVISADKASHEANSVQDITMSCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.781e-22
Identity = 47/162 (29.01%), Postives = 89/162 (54.94%), Query Frame = 3
Query:    6 APLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--------TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            AP+ S     + + +V E+T   ++  N M   DPR G+Y+  + ++RG +  K+ +  +  ++ K +  FV+W P   K  +C+ PP          +K +   + N+T+I   + R+  +F  ++ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  272 APIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEGMEEGEFSEARQDLAALEKDYEE 433          
The following BLAST results are available for this feature:
BLAST of EY685422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA3_YEAST4.003e-2331.06Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA2_NEUCR5.228e-2330.67Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA_MYCGR6.828e-2330.06Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA3_CHICK8.918e-2331.29Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA_DICDI1.987e-2230.59Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA6_NAEGR2.595e-2233.33Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA_SORMA4.426e-2230.06Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA3E_HUMAN4.426e-2231.29Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA1_EMENI4.426e-2229.45Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBAA_SCHCO5.781e-2229.01Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-A09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685422 ID=EY685422; Name=EY685422; organism=Citrus sinensis; type=EST; length=932bp
GATTCGCTCCCCTCACCTCTCGTGGATCACAGCAATACAGGGCTCTCACT
GTTCCTGAGCTCACTCAACAAATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGATCCTCGACACGGTCGGTACTTGACTGCTTCTGCGATGTTCCGTG
GCAAGATGAGCACCAAGGAGGTTGACGAACAGATGATCAATGTGCAGAAC
AAGAACTCATCATACTTTGTTGAGTGGATTCCCAACAATGTGAAGTCTAC
TGTTTGTGACATCCCTCCGACTGGTCTCAAAATGGCATCCACCTTCATTG
GTAACTCCACCTCAATTCAGGAAATGTTCAGGAGGGTGAGTGAACAGTTC
ACTGCCATGTTCCGCAGAAAGGCTTTTCTGCATTGGTACACTGGAGAGGG
TATGGATGAGATGGAGTTTACCGAGGCAGAGAGCAATATGAACGATCTGG
TTTCTGAGTACCAACAGTATCAAGATGCAACTGCAGAGGAGGATTATGAG
TATGATGATGAAGAGGAACCACAAGAGGAAGTCCTATAATGTTTGATATA
TGATCTGTGGATTGCCGTTCAGTTTGTTCCATGTTAACTTGAGCAGTTGA
TGTCCTCCTTTTTCATTCTTCACGTATTTATCCGCCTTTTAAGGGGGACG
CATTACTTGGGTATTCGTATAAAGGTCATAACAGAAAACATCTTCATCAT
AAAAAGCTATAGAACAAAGACAAAGGCCACGTATACAACAACAACCCACC
ATACACACCACACACCCGAGTGAGAACCATATTAACTAAATTATCTCACT
TAAAATTATTGCAAAACACAACAAAGAAGAAAGAACAACGAAACGACGAC
AACATACAAATGATAGAGAAGCGCCGCCGCGAACGCCCGCCAGCGCCAAA
AAACGCGAAGTACAAACAAACCCACCGAGGCC
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