EY685422

Overview
NameEY685422
Unique NameEY685422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.682e-21
Identity = 51/163 (31.29%), Postives = 90/163 (55.21%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            FAP+ S     +   +V ++T   +++ N +   DPR G+Y+    ++RG +  KEV+  +   ++++S  FV+W P   K  + + PPT   G  +A        + N+T+I E + R+  +F  M+ ++AFLHWY  EGM+E EF EA  ++  L  +Y++
Sbjct:  279 FAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDLAALERDYEE 441          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.893e-21
Identity = 48/163 (29.45%), Postives = 85/163 (52.15%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTG--------LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            ++P+ S     + A +V E+T   ++  N M   DPRHG+Y+    ++RG +   +    +  ++ K +  FV+W P   K  +C   P          +  A   + N+T+I E +  +S +F  M  ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  272 YSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.893e-21
Identity = 49/168 (29.17%), Postives = 88/168 (52.38%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +AP+ S     + +    ELT Q ++  N M   DPR+G+Y+  + ++RG +  ++    +  ++ K+S   VEW P   K  +    P  +  AS             + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  273 YAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASLEKDYEE 440          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.391e-21
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--------TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDE 410
            +AP+ S     + A +V E+T   ++  N M   DPR+G+Y+    ++RG + TK+V+  +  V+ K +  FV+W P   K  VC  PP          +  A   + N+TSI E + R+  +F  M+ ++AF+HWY GEGM+E
Sbjct:   69 YAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWYVGEGMEE 212          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.347e-21
Identity = 46/144 (31.94%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   60 LTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:    1 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 144          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.090e-20
Identity = 48/163 (29.45%), Postives = 85/163 (52.15%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--------TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +AP+ S     +  L+V E+T   ++  N M   DP+ G+Y+    ++RG +  K+V+  +  ++   S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY  EGM+E EF EA  ++  L  +Y +
Sbjct:  269 YAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDYDE 431          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.424e-20
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +APL S   +Q+   +V E+T   +++ N M   D + G+Y+    ++RG +  K+    + +++ K +  FV+W P   K  VC+  P    G  +A        + N+T+I   + R+  +F  M+R++AF+HWY GE M+E EF+EA  ++  L  +Y++
Sbjct:  270 YAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLSNTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDLAALEKDYEE 432          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.424e-20
Identity = 51/163 (31.29%), Postives = 87/163 (53.37%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTV-----CDIPPTGLKMAST---FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +APL S     +    +  LT   +++ NMM   DPR G+++    ++RG +  K+V+  +  +++K    FV+W P   K  +       +P   L   S     + N+T+I   F  +S +F  MF+++AF+HWY GEGM+E EFTEA  N+  L  ++++
Sbjct:  283 YAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPRAGKFMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEE 445          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.172e-20
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMAS-----TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +AP+ S     + +  V +LT Q  +  N M   DPR+G+Y+  + ++RG    ++  + + +++ K S   VEW P   K  +    P    G ++A      + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  274 YAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 436          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.229e-20
Identity = 49/162 (30.25%), Postives = 86/162 (53.09%), Query Frame = 3
Query:    6 APLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--------TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            AP+ S        L+V ++T   ++  N +   DPR G+Y+    ++RG +  K+V+E +  ++++ S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ +KAFLHWY  EGM+  EF EA  ++  L  +Y++
Sbjct:  280 APIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDLAALEKDYEE 441          
The following BLAST results are available for this feature:
BLAST of EY685422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBAL3_HUMAN1.682e-2131.29Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA_GIBZE4.893e-2129.45Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA1_NEUCR4.893e-2129.17Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBAA_PNECA6.391e-2134.03Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBA_LYTPI8.347e-2131.94Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA2_CHICK1.090e-2029.45Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBAB_SCHCO1.424e-2030.06Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA4_DROME1.424e-2031.29Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBA2_EMENI3.172e-2030.06Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBAL3_MOUSE9.229e-2030.25Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-A09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685422 ID=EY685422; Name=EY685422; organism=Citrus sinensis; type=EST; length=932bp
GATTCGCTCCCCTCACCTCTCGTGGATCACAGCAATACAGGGCTCTCACT
GTTCCTGAGCTCACTCAACAAATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGATCCTCGACACGGTCGGTACTTGACTGCTTCTGCGATGTTCCGTG
GCAAGATGAGCACCAAGGAGGTTGACGAACAGATGATCAATGTGCAGAAC
AAGAACTCATCATACTTTGTTGAGTGGATTCCCAACAATGTGAAGTCTAC
TGTTTGTGACATCCCTCCGACTGGTCTCAAAATGGCATCCACCTTCATTG
GTAACTCCACCTCAATTCAGGAAATGTTCAGGAGGGTGAGTGAACAGTTC
ACTGCCATGTTCCGCAGAAAGGCTTTTCTGCATTGGTACACTGGAGAGGG
TATGGATGAGATGGAGTTTACCGAGGCAGAGAGCAATATGAACGATCTGG
TTTCTGAGTACCAACAGTATCAAGATGCAACTGCAGAGGAGGATTATGAG
TATGATGATGAAGAGGAACCACAAGAGGAAGTCCTATAATGTTTGATATA
TGATCTGTGGATTGCCGTTCAGTTTGTTCCATGTTAACTTGAGCAGTTGA
TGTCCTCCTTTTTCATTCTTCACGTATTTATCCGCCTTTTAAGGGGGACG
CATTACTTGGGTATTCGTATAAAGGTCATAACAGAAAACATCTTCATCAT
AAAAAGCTATAGAACAAAGACAAAGGCCACGTATACAACAACAACCCACC
ATACACACCACACACCCGAGTGAGAACCATATTAACTAAATTATCTCACT
TAAAATTATTGCAAAACACAACAAAGAAGAAAGAACAACGAAACGACGAC
AACATACAAATGATAGAGAAGCGCCGCCGCGAACGCCCGCCAGCGCCAAA
AAACGCGAAGTACAAACAAACCCACCGAGGCC
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