EY685422

Overview
NameEY685422
Unique NameEY685422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.056e-19
Identity = 49/169 (28.99%), Postives = 87/169 (51.48%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLK--------MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            +AP+ S     +  L+V ++T   ++  N M   DP  G+Y+    ++RG +  K+V+  + +V+ K    FV+W P   K  +    P  ++         A   + N+T+I E + R+  +F  M+ ++AF+HW+ GEGM+E EF EA  ++  L  +Y +    TA
Sbjct:  275 YAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTA 443          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.685e-19
Identity = 52/162 (32.10%), Postives = 94/162 (58.02%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 461
            +AP+ +      + L+V ELT  ++D  ++M   D    G++++   M+RG +S++EV+  +  ++ +N+  FV W P + K  +   P T   G   AST      I N T++ ++F++V++ F  MF ++AF+H Y GEGM+E EFT+A  ++ +L  +Y
Sbjct:  277 YAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELEVDY 438          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.507e-19
Identity = 48/151 (31.79%), Postives = 83/151 (54.97%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSTVCDIPPT------GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 416
            +AP+ S+   ++  +TV  +T  ++   N+M    P  G+Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  PT      G  MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  181 YAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.638e-18
Identity = 44/146 (30.14%), Postives = 79/146 (54.11%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMA-------STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 419
            ++P+ S G   + + +V E+T   ++  N M   DPR+G+Y+    ++RG +  K+V      ++ K +  FV+  P   K  +C  PPT +          +  + N+T+I E +  +S +F  ++ ++AF+HWY GEGM+E EF
Sbjct:  273 YSPVVSAGKASHESNSVMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.379e-15
Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = 3
Query:   87 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEYQQYQDAT 482
            + +  ADP+H  YL  + M RG +   ++   +  +  K S  FV W     K+++C +PP G   +   + N+T ++  F  + E+F  ++++KA LH Y   EGM+E  FTEA S+++ L+ EY Q  DAT
Sbjct:  331 HQLLRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEYDQL-DAT 460          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.801e-15
Identity = 46/168 (27.38%), Postives = 86/168 (51.19%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAS------------TFIGNSTSIQEMFRRVS-EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 467
            +AP+ S     + +  V +LT Q ++  N M   DPR+G+Y+  + ++RG    ++ +  +  ++ K+S   VEW P   K  +    P  +  A             + + N+T++ E + +    +F  M  ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  273 YAPVISGFKSAHESFKV-QLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 439          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.012e-15
Identity = 43/133 (32.33%), Postives = 74/133 (55.64%), Query Frame = 3
Query:   87 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEYQQYQDAT 482
            + +  ADPRH  YL  + + RG +   ++   +  +  K +  FV W     K+++C +PP G   +   + N+T ++  F  + E+FT ++++KA LH Y   +GM+E  FTEA S+++ L+ EY    DAT
Sbjct:  331 HQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDL-DAT 460          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.436e-14
Identity = 39/135 (28.89%), Postives = 72/135 (53.33%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLH 383
            ++P+ S+    +  L+V E+T   ++ ++ M   D R G+Y+    +FRG ++ K+ +    NV+ K ++ FVEW P   K  +    PT L          A   + N+T+I E ++R++ +F  MF ++AF+H
Sbjct:  246 YSPMLSKEKAAHEKLSVQEITNACFEPQSQMVRCDTRKGKYMACCLLFRGDVNPKDANTATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVH 380          
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.366e-13
Identity = 45/171 (26.32%), Postives = 89/171 (52.05%), Query Frame = 3
Query:    3 FAPLTSRGSQQYRAL---TVPELTQQMWDAKNMMCA---ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEM---EFTEAESNMNDLVSEYQQYQDA 479
            + P TS   +Q +A+   TV ++ +++   KN + +      RH  Y++   + +G++   +V + ++ ++ +NS+ F+ W P +++  +    P   T  K++   + N T+I  +F+R   Q+  + +R AF+  Y  E M E    EF EA + + DL+ EYQ  + A
Sbjct:  272 YTPFTSDKIEQAKAVRKTTVLDVMRRLLQPKNRLVSMPTTPSRHACYISILNIIQGEVDPTDVHKSLLRIRERNSATFIPWGPASIQVALTKQSPYVQTTHKVSGLMLANHTNIASIFKRTVAQYDQLRKRNAFMPQYQKEAMFEKNLDEFDEARATVQDLIEEYQACEKA 442          
The following BLAST results are available for this feature:
BLAST of EY685422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA8_CAEEL2.056e-1928.99Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA1_ENTHI2.685e-1932.10Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA_DICPU3.507e-1931.79Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA_AJECA8.638e-1830.14Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBE_HUMAN1.379e-1533.83Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBA_GLOLA1.801e-1527.38Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBE_MOUSE4.012e-1532.33Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBA_ENCHE4.436e-1428.89Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]
TBG_USTVI8.366e-1326.32Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-A09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685422 ID=EY685422; Name=EY685422; organism=Citrus sinensis; type=EST; length=932bp
GATTCGCTCCCCTCACCTCTCGTGGATCACAGCAATACAGGGCTCTCACT
GTTCCTGAGCTCACTCAACAAATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGATCCTCGACACGGTCGGTACTTGACTGCTTCTGCGATGTTCCGTG
GCAAGATGAGCACCAAGGAGGTTGACGAACAGATGATCAATGTGCAGAAC
AAGAACTCATCATACTTTGTTGAGTGGATTCCCAACAATGTGAAGTCTAC
TGTTTGTGACATCCCTCCGACTGGTCTCAAAATGGCATCCACCTTCATTG
GTAACTCCACCTCAATTCAGGAAATGTTCAGGAGGGTGAGTGAACAGTTC
ACTGCCATGTTCCGCAGAAAGGCTTTTCTGCATTGGTACACTGGAGAGGG
TATGGATGAGATGGAGTTTACCGAGGCAGAGAGCAATATGAACGATCTGG
TTTCTGAGTACCAACAGTATCAAGATGCAACTGCAGAGGAGGATTATGAG
TATGATGATGAAGAGGAACCACAAGAGGAAGTCCTATAATGTTTGATATA
TGATCTGTGGATTGCCGTTCAGTTTGTTCCATGTTAACTTGAGCAGTTGA
TGTCCTCCTTTTTCATTCTTCACGTATTTATCCGCCTTTTAAGGGGGACG
CATTACTTGGGTATTCGTATAAAGGTCATAACAGAAAACATCTTCATCAT
AAAAAGCTATAGAACAAAGACAAAGGCCACGTATACAACAACAACCCACC
ATACACACCACACACCCGAGTGAGAACCATATTAACTAAATTATCTCACT
TAAAATTATTGCAAAACACAACAAAGAAGAAAGAACAACGAAACGACGAC
AACATACAAATGATAGAGAAGCGCCGCCGCGAACGCCCGCCAGCGCCAAA
AAACGCGAAGTACAAACAAACCCACCGAGGCC
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