EY685422

Overview
NameEY685422
Unique NameEY685422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2B_MOUSE (Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2B_HUMAN (Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2B_BOVIN (Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2A_RAT (Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2A_MOUSE (Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2A_MACFA (Tubulin beta-2A chain OS=Macaca fascicularis GN=TUBB2A PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB2A_HUMAN (Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of EY685422 vs. ExPASy Swiss-Prot
Match: TBB1_CHICK (Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.178e-81
Identity = 142/161 (88.20%), Postives = 155/161 (96.27%), Query Frame = 3 
Query:    3 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 485
            FAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK+ VCDIPP GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of EY685422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB2_CHICK7.178e-8188.20Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBB2B_RAT7.178e-8188.20Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2B_MOUSE7.178e-8188.20Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE... [more]
TBB2B_HUMAN7.178e-8188.20Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE... [more]
TBB2B_BOVIN7.178e-8188.20Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1... [more]
TBB2A_RAT7.178e-8188.20Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2A_MOUSE7.178e-8188.20Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE... [more]
TBB2A_MACFA7.178e-8188.20Tubulin beta-2A chain OS=Macaca fascicularis GN=TU... [more]
TBB2A_HUMAN7.178e-8188.20Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE... [more]
TBB1_CHICK7.178e-8188.20Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-019-A09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685422 ID=EY685422; Name=EY685422; organism=Citrus sinensis; type=EST; length=932bp
GATTCGCTCCCCTCACCTCTCGTGGATCACAGCAATACAGGGCTCTCACT
GTTCCTGAGCTCACTCAACAAATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGATCCTCGACACGGTCGGTACTTGACTGCTTCTGCGATGTTCCGTG
GCAAGATGAGCACCAAGGAGGTTGACGAACAGATGATCAATGTGCAGAAC
AAGAACTCATCATACTTTGTTGAGTGGATTCCCAACAATGTGAAGTCTAC
TGTTTGTGACATCCCTCCGACTGGTCTCAAAATGGCATCCACCTTCATTG
GTAACTCCACCTCAATTCAGGAAATGTTCAGGAGGGTGAGTGAACAGTTC
ACTGCCATGTTCCGCAGAAAGGCTTTTCTGCATTGGTACACTGGAGAGGG
TATGGATGAGATGGAGTTTACCGAGGCAGAGAGCAATATGAACGATCTGG
TTTCTGAGTACCAACAGTATCAAGATGCAACTGCAGAGGAGGATTATGAG
TATGATGATGAAGAGGAACCACAAGAGGAAGTCCTATAATGTTTGATATA
TGATCTGTGGATTGCCGTTCAGTTTGTTCCATGTTAACTTGAGCAGTTGA
TGTCCTCCTTTTTCATTCTTCACGTATTTATCCGCCTTTTAAGGGGGACG
CATTACTTGGGTATTCGTATAAAGGTCATAACAGAAAACATCTTCATCAT
AAAAAGCTATAGAACAAAGACAAAGGCCACGTATACAACAACAACCCACC
ATACACACCACACACCCGAGTGAGAACCATATTAACTAAATTATCTCACT
TAAAATTATTGCAAAACACAACAAAGAAGAAAGAACAACGAAACGACGAC
AACATACAAATGATAGAGAAGCGCCGCCGCGAACGCCCGCCAGCGCCAAA
AAACGCGAAGTACAAACAAACCCACCGAGGCC
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