EY685356

Overview
NameEY685356
Unique NameEY685356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685356_ssr391 microsatellite EY685356_ssr391:391..402. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685356 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 3
Query:    9 AFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 431
            A+ MG   N+  W++Y+        ++ P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  146 AYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of EY685356 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 3
Query:    9 AFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 431
            A+ MG   N+  W++Y+        ++ P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  146 AYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of EY685356 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 3
Query:    9 AFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 431
            A+ MG   N+  W++Y+        ++ P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  146 AYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of EY685356 vs. ExPASy Swiss-Prot
Match: DCAM_CAEEL (S-adenosylmethionine decarboxylase proenzyme OS=Caenorhabditis elegans GN=smd-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.660e-15
Identity = 54/157 (34.39%), Postives = 86/157 (54.78%), Query Frame = 3
Query:    9 AFVMGSPDNTKRWHVYS--ASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPK-SEICDFEFDPCGYSMNSI--EGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGD 464
            A+ +GS     RW++Y+     E  +H  P +TLE+ M+ LD +    F K            +GI KI+P  +++ D  FDPCGYSMN+   + D  +TIHVTPE  FS+ASFE    + ++V L     +VL CF+P +  + + ++ + ++  D
Sbjct:  161 AYCLGSLKQD-RWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMRAGIDKIIPAGADVHDELFDPCGYSMNAYMNDTDQYATIHVTPEKAFSFASFET---NQDLVCLYSQTRKVLQCFRPNKILMTVFANDISEKGKD 313          
BLAST of EY685356 vs. ExPASy Swiss-Prot
Match: DCAM_XENLA (S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis GN=amd1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.798e-13
Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = 3
Query:    9 AFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 431
            A+ MG   N+  W++Y+        ++ P  TLE+ M+ LD +    FY     +A  +T  SGIR ++  S I    F PCGYSMN ++ D    TIH+TPE  FSY SFE    +  +     L+ +V+  FKP +F   L
Sbjct:  148 AYCMGRI-NSDCWYLYTLDIPDEYVISQPDQTLEILMSELDPEVMDQFYMKEGVTANDVTRVSGIRDLITGSVIDATMFSPCGYSMNGMKSDGTYWTIHITPEPDFSYVSFET---NVSLTTYDDLISKVVDVFKPRKFVTTL 286          
BLAST of EY685356 vs. ExPASy Swiss-Prot
Match: DCAM_ONCVO (S-adenosylmethionine decarboxylase proenzyme OS=Onchocerca volvulus GN=smd-1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.141e-13
Identity = 60/191 (31.41%), Postives = 85/191 (44.50%), Query Frame = 3
Query:    6 TAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFE-FDPCGYSMNSI--EGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDE--HGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSR 560
            +A+ +G P    RW +Y+          P +TLE+ M GL     S F              S I  ILP   +   E F PCGYS+N +    D   TIHVTPE  FSY SFE    +   + L   + +VL  FKP++F + + ++ + +E       + DLK   C     + L     +LIY  F R
Sbjct:  164 SAYCIG-PQRQDRWFLYTMVTPQAVFPFPEHTLEILMNGLPEDVLSTFSPNVSKDGKDCRMKSAINTILPPDIVVHEELFSPCGYSLNGLIPHSDHYITIHVTPEPDFSYVSFET---NQHTLNLCEQMLKVLEIFKPSKFLLTIFTNELSNEGKKMQKNLWDLKICGCRRTNLQFLELPTETLIYVQFER 350          
BLAST of EY685356 vs. ExPASy Swiss-Prot
Match: DCAM_TRYCR (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 3
Query:  102 LEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICD-------FEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD 440
            L M M GLDR +   ++     S    TE + IRK     ++ D        +F+PCGYS+N+I G    TIH+TPED  S+AS+E    +   V  +  +  VL  F P  FSV +  D
Sbjct:  193 LSMTMYGLDRTQTKHWFSDRFISTG--TETAAIRKATKLDKVADDSWKLHDLQFEPCGYSINTIRGAEYQTIHITPEDHCSFASYET---NTPAVNYSERINTVLGVFAPIRFSVIVFID 307          
The following BLAST results are available for this feature:
BLAST of EY685356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM2_MUSSP2.989e-1536.36S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE2.989e-1536.36S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_MOUSE2.989e-1536.36S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_CAEEL6.660e-1534.39S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_XENLA2.798e-1335.66S-adenosylmethionine decarboxylase proenzyme OS=Xe... [more]
DCAM_ONCVO8.141e-1331.41S-adenosylmethionine decarboxylase proenzyme OS=On... [more]
DCAM_TRYCR2.619e-1135.83S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-018-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685356 ID=EY685356; Name=EY685356; organism=Citrus sinensis; type=EST; length=911bp
ACAGCACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCAT
GTTTACTCTGCCTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACAC
TCTAGAGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCT
ACAAAACTAATGAAAGCTCAGCCGCTATGATGACCGAGGACTCTGGCATC
AGAAAGATTCTTCCAAAATCTGAGATTTGTGATTTTGAGTTTGACCCTTG
TGGTTACTCCATGAATAGTATTGAAGGGGATGCAGTATCTACTATCCACG
TCACACCTGAAGATGGTTTCAGTTATGCAAGTTTTGAGGCTGTGGGTTAT
GATTTTGAGGTTGTGAAGTTGACTCCCTTGCTTGAGAGGGTGCTTGCTTG
CTTCAAACCCGCTGAGTTTTCTGTTGCTCTGCATTCTGACATTGTTGGCG
ATGAACATGGAGACACCTTCATGCTGGACTTGAAGGGATATTCCTGTGGA
GAAAAGATATATGAAGAGCTCGGTAATAATGGTTCGCTGATCTACTACAG
CTTTTCAAGGGCTGATTGCTCCACAATCTCCTAAAGACAATCATTGAAAT
TGCTGTTGGAGCGAGGACGAGAAAGGACGAGGAAAGTAAGGGGAAATAGT
GCCCCGGATATAATATCGGGTTTTGTTTTTTCCATTTAATCCCTTCGCTT
ATAAAAATAAAATGGGGGGGGGGGTAATTTATGGTTGGCGCTTGAGCAAA
CCTTAACTTTTCCCAATAGCAGGATTATACCATGAGGGGGTGCGAACGAG
GAACGCATTTGAATAGCCGCCATACGACAAGGTGCGGAGATGATAAAACG
TGGACAAGCGACACAGCTGGCATACGCACGGGTGAGGCCGCGCGCCAGCC
ACGGACGGTGC
back to top