EY685345

Overview
NameEY685345
Unique NameEY685345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.771e-50
Identity = 96/119 (80.67%), Postives = 105/119 (88.24%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 359
            MLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQPG AF+ AT+
Sbjct:  102 MLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.849e-49
Identity = 94/118 (79.66%), Postives = 106/118 (89.83%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 356
            MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.849e-49
Identity = 94/118 (79.66%), Postives = 106/118 (89.83%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 356
            MLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.374e-34
Identity = 69/105 (65.71%), Postives = 82/105 (78.10%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 317
            MLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +  HGPL
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLIPDGCGVKYVPSHGPL 206          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.516e-34
Identity = 69/105 (65.71%), Postives = 81/105 (77.14%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 317
            MLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 7.516e-34
Identity = 69/105 (65.71%), Postives = 81/105 (77.14%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 317
            MLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 144.436 bits (363), Expect = 7.516e-34
Identity = 69/105 (65.71%), Postives = 81/105 (77.14%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 317
            MLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 71/106 (66.98%), Postives = 79/106 (74.53%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLA 320
            MLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIA 207          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.282e-33
Identity = 69/105 (65.71%), Postives = 81/105 (77.14%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 317
            MLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of EY685345 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.282e-33
Identity = 69/105 (65.71%), Postives = 81/105 (77.14%), Query Frame = 3
Query:    3 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 317
            MLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  102 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
The following BLAST results are available for this feature:
BLAST of EY685345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL103_ARATH9.771e-5080.6760S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ORYSJ4.849e-4979.6660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI4.849e-4979.6660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10L_MACFA3.374e-3465.7160S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10_SHEEP7.516e-3465.7160S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG7.516e-3465.7160S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN7.516e-3465.7160S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10_DROME9.816e-3466.9860S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_RAT1.282e-3365.7160S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PAPAN1.282e-3365.7160S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-H10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685345 ID=EY685345; Name=EY685345; organism=Citrus sinensis; type=EST; length=856bp
AGATGCTTTCGTGTGCTGGGGCTGATCGGCTCCAGACTGGAATGAGGGGT
GCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGT
CTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCAGGAGG
CCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTC
AGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTGAGGTG
GAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCTTCTCG
GATGTCATGGTCCTTTGGCTCAACGCCAACCTGGAAGAGCTTTCCTGGAA
GCAACAACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGTGACTACT
GTCTAGTTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAACTGGATT
TCTCAAGTTGAAGTGACATGTTTATTTGGTTTAACTATGTGATCCTTGCA
GTTGTCTTAGTGAATTTGCAATTTGCACTCTTCTATATGATTTGTATGGC
TTATTTTTTATTCCACCTTTTCTCCCTCATTGCTGATTGGGCAACATGGC
AAATTTGGGTTGGTGATATAATCTTAATCAGCCAAAATCCTTCGTGGTTA
AGCTGATCTGGAAAAATCTGAGGAAATAATTAGGCGAAAAAAATCGTGGG
CTTCAATAAAACACAAAACACACCTAACCGAGACACATACCTCAAAAACA
GACAAAAACGCCCGCGCCCCCTCAACAAGGACCTACCCTTCCCTACTCCT
GCCATGCGCACCACAACCTATCTACAATTGGCACACTAAAATTACTTCTA
GAGCAT
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