EY685334

Overview
NameEY685334
Unique NameEY685334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12086 contig Csv1_Contig12086:264..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685334 vs. ExPASy Swiss-Prot
Match: RL23_METKA (50S ribosomal protein L23P OS=Methanopyrus kandleri GN=rpl23p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    4 DHYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXXMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 258
            D + +L YP+ TE AM+ +E  N L F                 ++D++ +KVNTLI P G KKAYV+L P+  A DVA  +GI+
Sbjct:   11 DPHDVLLYPVATEKAMRLMEAENKLTFIVRRDANKPLIKKAVEELFDVEVEKVNTLITPTGEKKAYVKLKPEYRAEDVAVDLGIL 95
The following BLAST results are available for this feature:
BLAST of EY685334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL23_METKA5.256e-1140.0050S ribosomal protein L23P OS=Methanopyrus kandler... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-G04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685334 ID=EY685334; Name=EY685334; organism=Citrus sinensis; type=EST; length=493bp
CTTGACCATTATCAGATTCTCAAGTACCCACTCACCACTGAATCAGCAAT
GAAGAAAATTGAAGACAACAATACTCTGGTTTTCATTGTTGACATACGGG
CTGATAAGAAAAAGATAAAGGATGCAGTTAAGAAGATGTATGATATCCAG
GCTAAGAAAGTGAATACCTTGATCAGGCCCGATGGTACAAAGAAGGCTTA
TGTCAGGTTGACACCAGACTCTGATGCTTTGGACGTAGCAAACAAGATTG
GAATCATTTAAACAATTGATCTTTCATTCACATTTTTGTGTATTTTTTAA
TCCAAAAAGTTAGTTATGTTAAGACCTCAAACAAAGATTTCCAAATTTGT
TCCTGTTAACTGTTTATGAATTTTATCCCCTGCATTAACAAATTGGTGGG
TGCATGAAATAATGCACTGGTCTGATAATGCTATTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
back to top