EY685308
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 5.865e-60 Identity = 104/134 (77.61%), Postives = 116/134 (86.57%), Query Frame = 2 Query: 44 DITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445 DITSIASNGG V+CM VWPP KK+ETLSYLP LSDE LLKEI YL++ GW+PCLEFE E G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP Sbjct: 44 DITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2) HSP 1 Score: 230.335 bits (586), Expect = 7.659e-60 Identity = 105/138 (76.09%), Postives = 119/138 (86.23%), Query Frame = 2 Query: 38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451 N DITSIASNGG V CM+VWPP +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 42 NLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.000e-59 Identity = 103/137 (75.18%), Postives = 119/137 (86.86%), Query Frame = 2 Query: 38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 448 NNDITSIASNGG V CMKVWPP G KKFETLSYLP L++ L KE++YL+R+ WIPC+EFELE G+VYREH +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP Sbjct: 40 NNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.000e-59 Identity = 103/136 (75.74%), Postives = 116/136 (85.29%), Query Frame = 2 Query: 38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445 +NDITSIASNGG VQCM+VWPP G KKFETLSYLPPLSD LL ++ YL+ GWIPC+EFELE +VYRE+H+SPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP Sbjct: 45 SNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 1.306e-59 Identity = 102/146 (69.86%), Postives = 121/146 (82.88%), Query Frame = 2 Query: 8 SADAWGNPHTNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445 S A+ NNDITS+ASNGG VQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE G+VYREH +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP Sbjct: 33 SVSAFPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 1.306e-59 Identity = 103/140 (73.57%), Postives = 121/140 (86.43%), Query Frame = 2 Query: 32 HTNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451 + N DITS+ASNGG V+CM+VWPP +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E+G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 41 NNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 1.706e-59 Identity = 103/138 (74.64%), Postives = 120/138 (86.96%), Query Frame = 2 Query: 38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451 N DITSIASNGG VQCM+VWPP KK+ETLSYLP LS+E LL+E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 43 NLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.229e-59 Identity = 101/140 (72.14%), Postives = 119/140 (85.00%), Query Frame = 2 Query: 32 HTNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451 + N DITS+ASNGG V+CM+VWPP +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYREH+ SPGYYDGRYWTMWKLPM+GCTD TQVL EV E + YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 41 NNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2) HSP 1 Score: 228.409 bits (581), Expect = 2.911e-59 Identity = 102/137 (74.45%), Postives = 118/137 (86.13%), Query Frame = 2 Query: 38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 448 NNDITSI SNGG V CMKVWPP G KKFETLSYLP L++ L KE++YL+R+ WIPC+EFELE G+VYREH +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP Sbjct: 40 NNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 3.801e-59 Identity = 100/136 (73.53%), Postives = 118/136 (86.76%), Query Frame = 2 Query: 38 NNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445 NNDITSI SNG V CM+VWPP G KKFETLSYLPPL+DE LLKE+ YL+R GW+PC+EFELEKG+V+R+++ SPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISFIA+ P Sbjct: 40 NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175 The following BLAST results are available for this feature:
BLAST of EY685308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >EY685308 ID=EY685308; Name=EY685308; organism=Citrus sinensis; type=EST; length=706bpback to top |