EY685308

Overview
NameEY685308
Unique NameEY685308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:142..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.764e-56
Identity = 94/135 (69.63%), Postives = 117/135 (86.67%), Query Frame = 2
Query:   41 NDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445
            ND +++ SNGG VQCMKVWPP G KK+ TLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP
Sbjct:   36 NDFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.495e-55
Identity = 96/130 (73.85%), Postives = 115/130 (88.46%), Query Frame = 2
Query:   62 SNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451
            SNGG ++CM+VWP  G+KKFETLSYLPPLS EAL K+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   39 SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.419e-55
Identity = 97/137 (70.80%), Postives = 116/137 (84.67%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445
            T   ++++ SNGG VQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   43 TVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.689e-55
Identity = 96/133 (72.18%), Postives = 115/133 (86.47%), Query Frame = 2
Query:   47 ITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445
            ++++ SNGG VQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   47 LSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.159e-54
Identity = 99/139 (71.22%), Postives = 118/139 (84.89%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451
            TN+   ++ SNGG ++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   32 TNSGFGNV-SNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.159e-54
Identity = 95/133 (71.43%), Postives = 115/133 (86.47%), Query Frame = 2
Query:   47 ITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445
            ++++ SNGG VQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  +P
Sbjct:   47 LSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.819e-54
Identity = 97/130 (74.62%), Postives = 113/130 (86.92%), Query Frame = 2
Query:   62 SNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451
            SNGG ++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   40 SNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.819e-54
Identity = 97/130 (74.62%), Postives = 113/130 (86.92%), Query Frame = 2
Query:   62 SNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 451
            SNGG ++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   40 SNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 96/137 (70.07%), Postives = 115/137 (83.94%), Query Frame = 2
Query:   35 TNNDITSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445
            T   ++++ SNGG VQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   43 TATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY685308 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.069e-53
Identity = 94/132 (71.21%), Postives = 108/132 (81.82%), Query Frame = 2
Query:   50 TSIASNGGIVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 445
            T I SNG  V+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+VY EH+KSP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCISFIA  P
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          
The following BLAST results are available for this feature:
BLAST of EY685308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS6_FLAPR8.764e-5669.63Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_WHEAT1.495e-5573.85Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS2_FRIAG7.419e-5570.80Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_FRIAG9.689e-5572.18Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_ORYSJ2.159e-5471.22Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS1_FRIAG2.159e-5471.43Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS1_ORYSJ2.819e-5474.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI2.819e-5474.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_FRIAG3.682e-5470.07Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_PEA9.069e-5371.21Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-C12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685308 ID=EY685308; Name=EY685308; organism=Citrus sinensis; type=EST; length=706bp
CCACGCGTCCGCGGACGCGTGGGGCAACCCCCATACCAACAATGACATTA
CTTCCATTGCAAGCAACGGCGGAATAGTCCAATGCATGAAGGTGTGGCCA
CCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTC
CGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGA
TTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCAC
CACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCT
GCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGG
AGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGAC
AACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGG
CGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGA
TTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCG
GTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTT
TTGGTTTTCTCCCCGACTTTGGCTTCTTTTTTTTTTTTTTATATATATTT
TAATAATTGAATCCCTTTGTTTTCAGTTTTCTTAAAAAAAAAAAAAAAAA
AAAAAA
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