EY685269

Overview
NameEY685269
Unique NameEY685269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.669e-11
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L  +  T    R+PT ET++  + +   + + L+
Sbjct:   62 VAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLV 139          

HSP 2 Score: 28.1054 bits (61), Expect = 1.669e-11
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   39 RPCKVVEVSTSKTGK 53          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.669e-11
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L ++  T    R+PT E++L  + D     + L+
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLV 138          

HSP 2 Score: 28.1054 bits (61), Expect = 1.669e-11
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   38 RPCKVVEVSTSKTGK 52          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.167e-11
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L ++  T    R+PT E +L  + D     + L+
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLV 138          

HSP 2 Score: 28.1054 bits (61), Expect = 2.167e-11
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   38 RPCKVVEVSTSKTGK 52          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 6.169e-11
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI  + K+ED+  SS NC+ PHV RT YQ   +S+DG+V  L DN  T    ++P  +T+L  +       + L+
Sbjct:   60 VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLV 137          

HSP 2 Score: 28.1054 bits (61), Expect = 6.169e-11
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   37 RPCKVVEVSTSKTGK 51          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  337 TLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            TLTGK I++ +  S+ + ++K  + + EGIPP  QRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    7 TLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 7.997e-11
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETML 285
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L +N  T    R+PT + +L
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALL 124          

HSP 2 Score: 28.1054 bits (61), Expect = 7.997e-11
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   38 RPCKVVEVSTSKTGK 52          
The following BLAST results are available for this feature:
BLAST of EY685269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
IF5A_MAIZE1.669e-1139.74Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A3_SOLTU1.669e-1141.03Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A2_SOLLC2.167e-1141.03Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_ARATH6.169e-1138.46Eukaryotic translation initiation factor 5A-1 OS=A... [more]
RUB1_YEAST7.334e-1147.14NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
IF5A1_SOLTU7.997e-1146.88Eukaryotic translation initiation factor 5A-1/2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685269 ID=EY685269; Name=EY685269; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTCATCCAATCCGTCCCTGCAAAGTTGTGGAAATCTCCA
CCTCCAAATACTGGAAGGTCCCGACCTGCTCCTTGCCACTTGTGTAGCAT
TTGATATCTCTCTTGCAGGCAAGATGGAAGATCTTGACGCCTCTTCTCCT
AACTGTAATGATCCCCATGTCGCTCGTACCCACTATCAGGAGAGTGTTCT
TTCTGACGATGGATTTGTGATCTTCCTGAATGACAATGCGAGGACGGGCG
CTCATTGGAGGATCCCAACCTCCGAAACGATGCTACTCTCCCTCTCGGAC
TCCGTCTCCGCGGCGGAATGACTTATCTTCTGTCTGACTCTGACCGGGAA
GACGATCACCCTGTATGTGGACAGCTCCAACTCGATCGACAACGTGAAGG
CGAAGATCCGGGACTATGAAGGGATCCCCCCGGACCATCAGAGGCTCATC
TTCACCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAACAT
CCAGAAGGAATCCACGCTCCACCTTGTGTTGCTCCTGAGGGGAGGAATGC
ACATCTTCGTCAAGACGTTGACCGGGATGACCATCACCCTGGAGGTGGAG
AGCTCCAACCCGATCGACCTCGCGAAGGCCAAGATTCACGAACAAGAGGG
GGATTCCTCCGGACCCCCAGAGGCTCCTCTCTCCCGGCAAGCTAGCTCCG
GGATGGCCTGAATCCCGCCGATTACGGCATTAACAAAGGAATCCACTCTC
CTCCTTGCCCTCCCGGTCCTCGGCCGTGGATGTCAAACAGAATAATTATC
GGACAGGCACCCATCTGACCTCACCAGCCACCAAGATGCCTTCAATTTCA
GTTGCCATGCGGCCTACAGCCTTATTCCATCCTCCCTCC
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