EY685269 | Citrus Genome Database

Overview


Name	EY685269
Unique Name	EY685269
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	889

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.624e-28
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++IDNVKAKI+D EGIPPD QRLIF GKQLEDGRTLADYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.921e-27
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++IDNVKAKI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.509e-27
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++I+NVKAKI+D EGIPPD QRLIF GKQLEDGRTLADYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.280e-27
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++IDNVK+KI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.280e-27
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++IDNVK+KI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.280e-27
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++IDNVK+KI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.280e-27
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++IDNVK+KI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.280e-27
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++IDNVK+KI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.590e-27
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++I NVKAK++D EGIPPD QRLIF GKQLEDGRTLADYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.300e-27
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1

Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++IDNVK KI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EY685269 vs. ExPASy Swiss-Prot

BLAST of EY685269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
UBIQ_ARATH	8.624e-28	85.14	Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=...	[more]
UBIQ_COPCO	1.921e-27	83.78	Ubiquitin OS=Coprinus congregatus PE=1 SV=1	[more]
UBIQ_CHLRE	2.509e-27	83.78	Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=...	[more]
UBIQ_YEAST	4.280e-27	82.43	Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1...	[more]
UBIQ_SCHPO	4.280e-27	82.43	Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=...	[more]
UBIQ_KLULA	4.280e-27	82.43	Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=...	[more]
UBIQ_CRYNE	4.280e-27	82.43	Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ...	[more]
UBIQ_CANAL	4.280e-27	82.43	Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1	[more]
UBL1_ORYSJ	5.590e-27	82.43	Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja...	[more]
UBIQ_NEUCR	7.300e-27	82.43	Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-011-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY685269 ID=EY685269; Name=EY685269; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTCATCCAATCCGTCCCTGCAAAGTTGTGGAAATCTCCA
CCTCCAAATACTGGAAGGTCCCGACCTGCTCCTTGCCACTTGTGTAGCAT
TTGATATCTCTCTTGCAGGCAAGATGGAAGATCTTGACGCCTCTTCTCCT
AACTGTAATGATCCCCATGTCGCTCGTACCCACTATCAGGAGAGTGTTCT
TTCTGACGATGGATTTGTGATCTTCCTGAATGACAATGCGAGGACGGGCG
CTCATTGGAGGATCCCAACCTCCGAAACGATGCTACTCTCCCTCTCGGAC
TCCGTCTCCGCGGCGGAATGACTTATCTTCTGTCTGACTCTGACCGGGAA
GACGATCACCCTGTATGTGGACAGCTCCAACTCGATCGACAACGTGAAGG
CGAAGATCCGGGACTATGAAGGGATCCCCCCGGACCATCAGAGGCTCATC
TTCACCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAACAT
CCAGAAGGAATCCACGCTCCACCTTGTGTTGCTCCTGAGGGGAGGAATGC
ACATCTTCGTCAAGACGTTGACCGGGATGACCATCACCCTGGAGGTGGAG
AGCTCCAACCCGATCGACCTCGCGAAGGCCAAGATTCACGAACAAGAGGG
GGATTCCTCCGGACCCCCAGAGGCTCCTCTCTCCCGGCAAGCTAGCTCCG
GGATGGCCTGAATCCCGCCGATTACGGCATTAACAAAGGAATCCACTCTC
CTCCTTGCCCTCCCGGTCCTCGGCCGTGGATGTCAAACAGAATAATTATC
GGACAGGCACCCATCTGACCTCACCAGCCACCAAGATGCCTTCAATTTCA
GTTGCCATGCGGCCTACAGCCTTATTCCATCCTCCCTCC