EY685269

Overview
NameEY685269
Unique NameEY685269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.300e-27
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++++NVK+KI+D EGIPPD QRLIF GKQLEDGRTLADYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.535e-27
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTI L V+SS++I+NVKAKI+D EGIPPD QRLIF GKQLEDGRTLADYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.535e-27
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+ S+SI+NVKAKI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.535e-27
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+ S++IDNVK KI+D EGIPPD QRLIF GKQLEDGRTLADYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.535e-27
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+ S+SI+NVKAKI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.535e-27
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+SS++I+NVK KI+D EGIPPD QRLIF GKQLEDGRTLADYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.245e-26
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V++S++I+NVKAKI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.245e-26
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V++S++I+NVKAKI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.626e-26
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V++S++I+NVKAKI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.626e-26
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTITL V+ S+SIDNVK KI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of EY685269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
UBIQ_ACECL7.300e-2781.08Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR9.535e-2782.43Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_STRPU9.535e-2782.43Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_EUPEU9.535e-2782.43Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_ENCCU9.535e-2782.43Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_ACACA9.535e-2782.43Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY1.245e-2681.08Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL1.245e-2681.08Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_TETPY1.626e-2681.08Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_PHYIN1.626e-2682.43Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685269 ID=EY685269; Name=EY685269; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTCATCCAATCCGTCCCTGCAAAGTTGTGGAAATCTCCA
CCTCCAAATACTGGAAGGTCCCGACCTGCTCCTTGCCACTTGTGTAGCAT
TTGATATCTCTCTTGCAGGCAAGATGGAAGATCTTGACGCCTCTTCTCCT
AACTGTAATGATCCCCATGTCGCTCGTACCCACTATCAGGAGAGTGTTCT
TTCTGACGATGGATTTGTGATCTTCCTGAATGACAATGCGAGGACGGGCG
CTCATTGGAGGATCCCAACCTCCGAAACGATGCTACTCTCCCTCTCGGAC
TCCGTCTCCGCGGCGGAATGACTTATCTTCTGTCTGACTCTGACCGGGAA
GACGATCACCCTGTATGTGGACAGCTCCAACTCGATCGACAACGTGAAGG
CGAAGATCCGGGACTATGAAGGGATCCCCCCGGACCATCAGAGGCTCATC
TTCACCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAACAT
CCAGAAGGAATCCACGCTCCACCTTGTGTTGCTCCTGAGGGGAGGAATGC
ACATCTTCGTCAAGACGTTGACCGGGATGACCATCACCCTGGAGGTGGAG
AGCTCCAACCCGATCGACCTCGCGAAGGCCAAGATTCACGAACAAGAGGG
GGATTCCTCCGGACCCCCAGAGGCTCCTCTCTCCCGGCAAGCTAGCTCCG
GGATGGCCTGAATCCCGCCGATTACGGCATTAACAAAGGAATCCACTCTC
CTCCTTGCCCTCCCGGTCCTCGGCCGTGGATGTCAAACAGAATAATTATC
GGACAGGCACCCATCTGACCTCACCAGCCACCAAGATGCCTTCAATTTCA
GTTGCCATGCGGCCTACAGCCTTATTCCATCCTCCCTCC
back to top