EY685269

Overview
NameEY685269
Unique NameEY685269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.348e-25
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTI L V+ S++I+NVKAKI+D EGIPPD QRLIF GKQLE+GRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.555e-24
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTG TI L V+ S++I+NVKAKI+D EGIPPD QRLIF  KQLE+GRTL+DYNIQKESTLHLVL LRGG
Sbjct:    3 IFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.687e-21
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1
Query:  352 TITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLR 540
            TITL V+ S++I+NVKAKI+D EGIPPD QRLIF GKQLEDGRTL+DYNIQKESTLHLVL LR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.334e-20
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTIT+  +  +++  VK KI D EG+P D QRLI+ GKQLED +TLADYNIQKESTLH+VL LRGG
Sbjct:    3 IFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.971e-20
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1
Query:  325 IFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            IF  TLTGKTIT   + + ++ ++K KI D EG+P D QRLIF GKQLED +T+ADYNIQKESTLH+VL LRGG
Sbjct:    3 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            LI   TLTGK I + ++ ++ +D +K ++ + EGIPP  QRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    2 LIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.908e-15
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  337 TLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            TLTGK I + ++ +++ID VK ++ + EGIPP  QRLI+ GKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  337 TLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            TLTGK I + ++ +++ID +K ++ + EGIPP  QRLI+ GKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  337 TLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            TLTGK I + ++ +++ID +K ++ + EGIPP  QRLI+ GKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.410e-15
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  337 TLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            TLTGK I + ++ +++ID +K ++ + EGIPP  QRLI+ GKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of EY685269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
UBIQ_LEIMA2.348e-2578.38Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA7.555e-2475.68Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE2.687e-2180.95Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP1.334e-2066.22Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC2.971e-2064.86Ubiquitin-like protein OS=Autographa californica n... [more]
NEDD8_DROME9.890e-1652.00NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB1_DESAN4.908e-1555.71NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ6.410e-1554.29NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ6.410e-1554.29NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH6.410e-1554.29NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685269 ID=EY685269; Name=EY685269; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTCATCCAATCCGTCCCTGCAAAGTTGTGGAAATCTCCA
CCTCCAAATACTGGAAGGTCCCGACCTGCTCCTTGCCACTTGTGTAGCAT
TTGATATCTCTCTTGCAGGCAAGATGGAAGATCTTGACGCCTCTTCTCCT
AACTGTAATGATCCCCATGTCGCTCGTACCCACTATCAGGAGAGTGTTCT
TTCTGACGATGGATTTGTGATCTTCCTGAATGACAATGCGAGGACGGGCG
CTCATTGGAGGATCCCAACCTCCGAAACGATGCTACTCTCCCTCTCGGAC
TCCGTCTCCGCGGCGGAATGACTTATCTTCTGTCTGACTCTGACCGGGAA
GACGATCACCCTGTATGTGGACAGCTCCAACTCGATCGACAACGTGAAGG
CGAAGATCCGGGACTATGAAGGGATCCCCCCGGACCATCAGAGGCTCATC
TTCACCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAACAT
CCAGAAGGAATCCACGCTCCACCTTGTGTTGCTCCTGAGGGGAGGAATGC
ACATCTTCGTCAAGACGTTGACCGGGATGACCATCACCCTGGAGGTGGAG
AGCTCCAACCCGATCGACCTCGCGAAGGCCAAGATTCACGAACAAGAGGG
GGATTCCTCCGGACCCCCAGAGGCTCCTCTCTCCCGGCAAGCTAGCTCCG
GGATGGCCTGAATCCCGCCGATTACGGCATTAACAAAGGAATCCACTCTC
CTCCTTGCCCTCCCGGTCCTCGGCCGTGGATGTCAAACAGAATAATTATC
GGACAGGCACCCATCTGACCTCACCAGCCACCAAGATGCCTTCAATTTCA
GTTGCCATGCGGCCTACAGCCTTATTCCATCCTCCCTCC
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