EY685269

Overview
NameEY685269
Unique NameEY685269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            LI   TLTGK I L ++ ++ ++ +K K+ + EGIPP  QRLIF GKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    2 LIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  337 TLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGGM 549
            TLTGK I + ++ +++ID +K ++ + EGIPP  QRLI+ GKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            LI   TLTGK I + ++ ++ ++ +K ++ + EGIPP  QRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            LI   TLTGK I + ++ ++ ++ +K ++ + EGIPP  QRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            LI   TLTGK I + ++ ++ ++ +K ++ + EGIPP  QRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            LI   TLTGK I + ++ ++ ++ +K ++ + EGIPP  QRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.155e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            LI   TLTGK I + ++ ++ ++ +K ++ + EGIPP  QRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.087e-14
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  337 TLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            TLTGK I + ++ ++++D +K ++ + EGIPP  QRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    7 TLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.256e-14
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  337 TLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            TLT K I + ++ +++I+ +K +I + EGIPP HQR+++TGKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    7 TLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGGM 549
            LI   TLTGK I + +D ++ I  +K ++ + EGIPP  QRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    2 LIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          
The following BLAST results are available for this feature:
BLAST of EY685269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
NEDD8_CAEEL1.093e-1452.00NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ARATH3.181e-1452.11NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT4.155e-1449.33NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT4.155e-1449.33NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE4.155e-1449.33NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN4.155e-1449.33NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN4.155e-1449.33NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ7.087e-1451.43NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RUB3_ARATH9.256e-1450.00NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI1.209e-1348.68NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685269 ID=EY685269; Name=EY685269; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTCATCCAATCCGTCCCTGCAAAGTTGTGGAAATCTCCA
CCTCCAAATACTGGAAGGTCCCGACCTGCTCCTTGCCACTTGTGTAGCAT
TTGATATCTCTCTTGCAGGCAAGATGGAAGATCTTGACGCCTCTTCTCCT
AACTGTAATGATCCCCATGTCGCTCGTACCCACTATCAGGAGAGTGTTCT
TTCTGACGATGGATTTGTGATCTTCCTGAATGACAATGCGAGGACGGGCG
CTCATTGGAGGATCCCAACCTCCGAAACGATGCTACTCTCCCTCTCGGAC
TCCGTCTCCGCGGCGGAATGACTTATCTTCTGTCTGACTCTGACCGGGAA
GACGATCACCCTGTATGTGGACAGCTCCAACTCGATCGACAACGTGAAGG
CGAAGATCCGGGACTATGAAGGGATCCCCCCGGACCATCAGAGGCTCATC
TTCACCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAACAT
CCAGAAGGAATCCACGCTCCACCTTGTGTTGCTCCTGAGGGGAGGAATGC
ACATCTTCGTCAAGACGTTGACCGGGATGACCATCACCCTGGAGGTGGAG
AGCTCCAACCCGATCGACCTCGCGAAGGCCAAGATTCACGAACAAGAGGG
GGATTCCTCCGGACCCCCAGAGGCTCCTCTCTCCCGGCAAGCTAGCTCCG
GGATGGCCTGAATCCCGCCGATTACGGCATTAACAAAGGAATCCACTCTC
CTCCTTGCCCTCCCGGTCCTCGGCCGTGGATGTCAAACAGAATAATTATC
GGACAGGCACCCATCTGACCTCACCAGCCACCAAGATGCCTTCAATTTCA
GTTGCCATGCGGCCTACAGCCTTATTCCATCCTCCCTCC
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