EY685269 | Citrus Genome Database

Overview


Name	EY685269
Unique Name	EY685269
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	889

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.294e-13
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L +N  T    R+PT +T+L  + D  +  + L+
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLV 138

HSP 2 Score: 29.6462 bits (65), Expect = 4.294e-13
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 2

Query:    8 SGHPI---RPCKVVEISTSKYWK 67
            SGH +   RPCKVVE+STSK  K
Sbjct:   30 SGHIVIKNRPCKVVEVSTSKTGK 52

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1

Query:  322 LIFCLTLTGKTITLYVDSSNSIDNVKAKIRDYEGIPPDHQRLIFTGKQLEDGRTLADYNIQKESTLHLVLLLRGG 546
            LI   TLTGK I L +D ++ +  +K ++ + EGIPP  QRLI+ GKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    2 LIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.223e-12
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L DN  T    R+PT +++L  + D  +  + L+
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLV 138

HSP 2 Score: 28.1054 bits (61), Expect = 1.223e-12
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2

Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   38 RPCKVVEVSTSKTGK 52

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.223e-12
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L DN  T    R+PT E +L  + D  +  + L+
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLV 138

HSP 2 Score: 28.1054 bits (61), Expect = 1.223e-12
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2

Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   38 RPCKVVEVSTSKTGK 52

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.223e-12
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L +N  T    R+PT +T+L  + D  +  + L+
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLV 138

HSP 2 Score: 28.1054 bits (61), Expect = 1.223e-12
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2

Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   38 RPCKVVEVSTSKTGK 52

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.679e-12
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L +N  T    R+PT + +L  + D  +  + L+
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLV 138

HSP 2 Score: 28.4906 bits (62), Expect = 2.679e-12
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 2

Query:    8 SGHPI---RPCKVVEISTSKYWK 67
            +GH +   RPCKVVE+STSK  K
Sbjct:   30 NGHIVIKGRPCKVVEVSTSKTGK 52

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.519e-12
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L +N  T    R+PT + +L  + D  +  + L+
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLV 138

HSP 2 Score: 28.4906 bits (62), Expect = 4.519e-12
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 2

Query:    8 SGHPI---RPCKVVEISTSKYWK 67
            +GH +   RPCKVVE+STSK  K
Sbjct:   30 NGHIVIKNRPCKVVEVSTSKTGK 52

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.519e-12
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L +N  T    R+PT + +L  + D  +  + L+
Sbjct:   61 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLV 138

HSP 2 Score: 28.4906 bits (62), Expect = 4.519e-12
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 2

Query:    8 SGHPI---RPCKVVEISTSKYWK 67
            +GH +   RPCKVVE+STSK  K
Sbjct:   30 NGHIVIKNRPCKVVEVSTSKTGK 52

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.869e-12
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETMLLSLSDSVSAAE*LI 327
            VA DI    K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L DN  T    ++PT +++L  + D  +  + L+
Sbjct:   61 VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLV 138

HSP 2 Score: 28.1054 bits (61), Expect = 5.869e-12
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2

Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   38 RPCKVVEVSTSKTGK 52

[Close]

BLAST of EY685269 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 7.622e-12
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1

Query:   94 VAFDISLAGKMEDLDASSPNCNDPHVARTHYQESVLSDDGFVIFLNDNARTGAHWRIPTSETML 285
            VA DI  A K+ED+  SS NC+ PHV RT YQ   +S+DGFV  L +N  T    R+PT +T+L
Sbjct:   61 VAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLL 124

HSP 2 Score: 28.1054 bits (61), Expect = 7.622e-12
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2

Query:   23 RPCKVVEISTSKYWK 67
            RPCKVVE+STSK  K
Sbjct:   38 RPCKVVEVSTSKTGK 52

The following BLAST results are available for this feature:

BLAST of EY685269 vs. ExPASy Swiss-Prot

BLAST of EY685269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
IF5A5_SOLTU	4.294e-13	42.31	Eukaryotic translation initiation factor 5A-5 OS=S...	[more]
UBL1_SCHPO	6.000e-13	46.67	Ubiquitin-like protein 1 OS=Schizosaccharomyces po...	[more]
IF5A4_SOLTU	1.223e-12	42.31	Eukaryotic translation initiation factor 5A-4 OS=S...	[more]
IF5A3_SOLLC	1.223e-12	43.59	Eukaryotic translation initiation factor 5A-3 OS=S...	[more]
IF5A1_SOLLC	1.223e-12	42.31	Eukaryotic translation initiation factor 5A-1 OS=S...	[more]
IF5A2_NICPL	2.679e-12	41.03	Eukaryotic translation initiation factor 5A-2 OS=N...	[more]
IF5A1_TOBAC	4.519e-12	41.03	Eukaryotic translation initiation factor 5A-1 OS=N...	[more]
IF5A1_NICPL	4.519e-12	41.03	Eukaryotic translation initiation factor 5A-1 OS=N...	[more]
IF5A2_MEDSA	5.869e-12	41.03	Eukaryotic translation initiation factor 5A-2 OS=M...	[more]
IF5A4_SOLLC	7.622e-12	50.00	Eukaryotic translation initiation factor 5A-4 OS=S...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-011-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY685269 ID=EY685269; Name=EY685269; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGTCATCCAATCCGTCCCTGCAAAGTTGTGGAAATCTCCA
CCTCCAAATACTGGAAGGTCCCGACCTGCTCCTTGCCACTTGTGTAGCAT
TTGATATCTCTCTTGCAGGCAAGATGGAAGATCTTGACGCCTCTTCTCCT
AACTGTAATGATCCCCATGTCGCTCGTACCCACTATCAGGAGAGTGTTCT
TTCTGACGATGGATTTGTGATCTTCCTGAATGACAATGCGAGGACGGGCG
CTCATTGGAGGATCCCAACCTCCGAAACGATGCTACTCTCCCTCTCGGAC
TCCGTCTCCGCGGCGGAATGACTTATCTTCTGTCTGACTCTGACCGGGAA
GACGATCACCCTGTATGTGGACAGCTCCAACTCGATCGACAACGTGAAGG
CGAAGATCCGGGACTATGAAGGGATCCCCCCGGACCATCAGAGGCTCATC
TTCACCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAACAT
CCAGAAGGAATCCACGCTCCACCTTGTGTTGCTCCTGAGGGGAGGAATGC
ACATCTTCGTCAAGACGTTGACCGGGATGACCATCACCCTGGAGGTGGAG
AGCTCCAACCCGATCGACCTCGCGAAGGCCAAGATTCACGAACAAGAGGG
GGATTCCTCCGGACCCCCAGAGGCTCCTCTCTCCCGGCAAGCTAGCTCCG
GGATGGCCTGAATCCCGCCGATTACGGCATTAACAAAGGAATCCACTCTC
CTCCTTGCCCTCCCGGTCCTCGGCCGTGGATGTCAAACAGAATAATTATC
GGACAGGCACCCATCTGACCTCACCAGCCACCAAGATGCCTTCAATTTCA
GTTGCCATGCGGCCTACAGCCTTATTCCATCCTCCCTCC