EY685267

Overview
NameEY685267
Unique NameEY685267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.983e-63
Identity = 129/203 (63.55%), Postives = 151/203 (74.38%), Query Frame = 1
Query:   79 NIATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP-----APNPS-GMVLMDRPGGKDSEC 669
            N    GNK    KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R V  +EAQAYA++N L FMETSAKTA NVN+IF  IAK+LP+ +P     AP  + G+ L +      S+C
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQC 213          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 5.088e-63
Identity = 129/203 (63.55%), Postives = 150/203 (73.89%), Query Frame = 1
Query:   79 NIATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP-----APNPS-GMVLMDRPGGKDSEC 669
            N    GNK    KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+LP+ +P     AP  + G+ L +      S+C
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQC 213          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 5.088e-63
Identity = 129/203 (63.55%), Postives = 150/203 (73.89%), Query Frame = 1
Query:   79 NIATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP-----APNPS-GMVLMDRPGGKDSEC 669
            N    GNK    KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+LP+ +P     AP  + G+ L +      S+C
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQC 213          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 5.088e-63
Identity = 124/195 (63.59%), Postives = 149/195 (76.41%), Query Frame = 1
Query:   97 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLM----DRPGGKDSEC 669
            NK    KLVLLG+   GKSSLVLRFV+G F++  ESTIGAAF +QT+ +ND TVKFEIWDTAGQERYH+LAPMYYRGA AAI+VYDI ++ SFERA KWV+ELQ QG+PN+V+ALAGNK DL   RKV   EAQ YA+ENGL FMETSAKT+ NVN++F EIAK+LP+       SG V +    +   GK ++C
Sbjct:    5 NKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPTTRPGSGRVAIAPIDNGNTGKKNKC 199          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 6.645e-63
Identity = 123/177 (69.49%), Postives = 140/177 (79.10%), Query Frame = 1
Query:   79 NIATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 609
            N    GNK    KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R V  +EAQAYA +N L FMETSAKTA NVN+IF  IAK+LP+ +P
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.678e-63
Identity = 123/183 (67.21%), Postives = 141/183 (77.05%), Query Frame = 1
Query:   79 NIATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSG 627
            N    GNK    KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R V  ++AQ YA +N L FMETSAKTA NVN+IF  IAK+LP+ +P   P G
Sbjct:   11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGG 193          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.307e-62
Identity = 124/191 (64.92%), Postives = 147/191 (76.96%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVLMDRPGGKDSEC 669
            KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +Q++ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGNKADL + R V  EEAQAYA +N L FMETSAKTA NVND+F  IAK+LP+ +P      A    G+ L ++     S+C
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQC 212          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.307e-62
Identity = 124/191 (64.92%), Postives = 147/191 (76.96%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVLMDRPGGKDSEC 669
            KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +Q++ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGNKADL + R V  EEAQAYA +N L FMETSAKTA NVND+F  IAK+LP+ +P      A    G+ L ++     S+C
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQC 212          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.307e-62
Identity = 124/191 (64.92%), Postives = 147/191 (76.96%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVLMDRPGGKDSEC 669
            KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +Q++ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGNKADL + R V  EEAQAYA +N L FMETSAKTA NVND+F  IAK+LP+ +P      A    G+ L ++     S+C
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQC 212          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.307e-62
Identity = 126/203 (62.07%), Postives = 150/203 (73.89%), Query Frame = 1
Query:   79 NIATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP------APNPSGMVLMDRPGGKDSEC 669
            N  +  +K    KLVLLG+   GKSSLVLRFVKGQF E  ESTIGAAF +Q++ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITNQ +F RAK WV+ELQ Q +P++V+ALAGNKADL   R V  EEAQAYA +N L FMETSAKTA NVND+F  IAK+LP+ +P      A    G+ L ++     S+C
Sbjct:   10 NGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGRSRGVDLHEQTQQNKSQC 212          
The following BLAST results are available for this feature:
BLAST of EY685267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5C_BOVIN2.983e-6363.55Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5C_PONAB5.088e-6363.55Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_HUMAN5.088e-6363.55Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5A_DICDI5.088e-6363.59Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB5C_MOUSE6.645e-6369.49Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_CHICK8.678e-6367.21Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5B_PONAB4.307e-6264.92Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE4.307e-6264.92Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN4.307e-6264.92Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB5B_CHICK4.307e-6262.07Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685267 ID=EY685267; Name=EY685267; organism=Citrus sinensis; type=EST; length=921bp
CCACGCGTCCGTTTTTTTTTCCTTAATTTCCCCTTTAACCCCCCGATCCA
ATTTTGATTCGGTCTTCGATCACATTAAAACATCGCCACCACTGGAAACA
AAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAG
TCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCATTGAGGGGGGGGA
ATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATG
CTACTGTAAAATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCAT
AGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTA
CGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAG
AACTTCAGGCACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAAC
AAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGC
TTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAG
CAACCAATGTGAATGACATTTTCTATGAAATAGCAAAGAGATTGCCTCGA
GTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTATGGATAGACCTGG
GGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAAATACTTGGGTGGTGA
TGGACCCTGTCTGTTTTTATCTTCTAAATGGCTTCCTCTAACTTTACTAG
GAACTTTTTTGAGTCTTATCCTTCCCAGGTTTGCTATCCCGGGTATTTTT
TTGTTTAAAATATCCCAACATTTAACTTGCCTTTCTGCCATTTTGGATTA
AACCTGGAAAATTAAATTTGGAAAGGGGGTTTCCCCTGGAAATCAAATTC
CCGGGGGGATGTTTCCCCTTT
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