EY685267

Overview
NameEY685267
Unique NameEY685267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.078e-20
Identity = 57/171 (33.33%), Postives = 97/171 (56.73%), Query Frame = 1
Query:   82 IATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 594
            +A  G   I  KLVL+GD G GK++ + R + G+F +   +T+G    +     N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D  KV A+    + ++N L + + SAK+  N    F+ +A++L
Sbjct:    1 MAGQGKPQIQFKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDIKD-MKVKAKPILFHRKKN-LQYYDISAKSNYNFEKPFFWLARKL 168          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.326e-20
Identity = 54/168 (32.14%), Postives = 99/168 (58.93%), Query Frame = 1
Query:   94 GNKNI--NAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 588
            GNK+     K+V++G  G GKS+L ++F++  F++  + TI  ++  Q + ++D     +I DTAGQE Y ++   Y R     ++VY +T++ SF+    + Q++Q   + + + + + GNK DL + R+V+ E+    A++    F+ETSAK A NV++ FY + +
Sbjct:    3 GNKSTIREYKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYRKQVV-IDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSLIR 169          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.326e-20
Identity = 56/167 (33.53%), Postives = 94/167 (56.29%), Query Frame = 1
Query:   94 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 594
            G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K+ +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct:    4 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 167          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.085e-20
Identity = 62/193 (32.12%), Postives = 107/193 (55.44%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSGMVLMDRPGGKDSECIM 675
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK DL  AR V + +AQ  A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG      PG    +C++
Sbjct:    5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG------PGCMSCKCVL 188          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.085e-20
Identity = 62/193 (32.12%), Postives = 107/193 (55.44%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSGMVLMDRPGGKDSECIM 675
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK DL  AR V + +AQ  A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG      PG    +C++
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG------PGCMSCKCVL 188          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RB32A_DICDI (Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ------AQGNPNMVMALAGNKADL-LDARKVTAEEAQAYAQENGLF-FMETSAKTATNV 561
            K++++GD+G GK+S++ RFV   F    +STIG  F  + +  +  T V+ ++WD AGQER+ S+  +YY+ A  A+I +D+T  ++FE   KW  ++       A   P  V+ LA NK DL  DA   TA +   Y ++NG   + ETSAK   N+
Sbjct:   17 KILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLA-NKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNI 173          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 52/172 (30.23%), Postives = 103/172 (59.88%), Query Frame = 1
Query:   91 TGNKNIN-AKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 600
            +G KN N  KL ++GD G GK+++ ++F+   F+   + TI  ++  Q + ++D     +I DTAGQ+   ++   + R     ++VY +T+++SF++   + +++ +   + ++ + + GNK+DL D R+VT +E +  A+  G+ FME SAKT +N+ ++F E  + + R
Sbjct:    2 SGYKNNNLVKLCIMGDGGVGKTAVTIQFISNHFVHYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKR 172          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 51/168 (30.36%), Postives = 97/168 (57.74%), Query Frame = 1
Query:   79 NIATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYE 579
            N     NKN   +L ++GD G GK+++  +F+   F+   + TI  ++  Q + V+D +   +I DTAGQ+   ++   + R     ++VY IT ++SF +   + +++ +     ++ + + GNK+DL++ R+VT  E +  AQ  G+ FME SAK  +N++++F+E
Sbjct:   23 NNCNNNNKNNIVQLCIMGDGGVGKTAVTTQFISNHFVYYYDPTIEDSYRKQ-ICVSDKSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNKSDLVNERQVTYHEGKELAQRLGMSFMEVSAKNRSNIDEVFHE 189          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 62/193 (32.12%), Postives = 107/193 (55.44%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK-----RLPRVQPAPNPSGMVLMDRPGGKDSECIM 675
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE   ++ +++ + + + ++ M L GNK D L AR V   +AQ  A+  G+ ++ETSAKT   V D FY + +     +L ++ P P+ SG      PG  + +C++
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LPARTVETRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNP-PDESG------PGCMNCKCVI 188          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAP1_PHYPO (Ras-related protein Rap-1 OS=Physarum polycephalum GN=RAP1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 59/190 (31.05%), Postives = 102/190 (53.68%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGGKDSECIML 678
            K+V+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +     ++VY I   ++F       ++ L+ +   ++ M L GNK DL + R ++ E+    A++  G  F+E SAK   NV  IFY++ +++ R  P P        ++   K   CI+L
Sbjct:    7 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIIAMSTFNDLPDLREQILRVKDCDDVPMVLVGNKCDLAEQRVISTEQGDELARKFGGCAFLEASAKNKINVEQIFYDLIRQINRKNPGPT-------NKKEKKSGGCILL 188          
The following BLAST results are available for this feature:
BLAST of EY685267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RANT_RAT4.078e-2033.33GTP-binding nuclear protein Ran, testis-specific i... [more]
RAS1_YEAST5.326e-2032.14Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]
RAN_SALSA5.326e-2033.53GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RASH_MSVNS9.085e-2032.12GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RASH_HUMAN9.085e-2032.12GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RB32A_DICDI1.187e-1937.34Ras-related protein Rab-32A OS=Dictyostelium disco... [more]
RASX_DICDI1.187e-1930.23Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RASV_DICDI1.187e-1930.36Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RASH_CHICK1.187e-1932.12GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]
RAP1_PHYPO1.187e-1931.05Ras-related protein Rap-1 OS=Physarum polycephalum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685267 ID=EY685267; Name=EY685267; organism=Citrus sinensis; type=EST; length=921bp
CCACGCGTCCGTTTTTTTTTCCTTAATTTCCCCTTTAACCCCCCGATCCA
ATTTTGATTCGGTCTTCGATCACATTAAAACATCGCCACCACTGGAAACA
AAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAG
TCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCATTGAGGGGGGGGA
ATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATG
CTACTGTAAAATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCAT
AGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTA
CGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAG
AACTTCAGGCACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAAC
AAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGC
TTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAG
CAACCAATGTGAATGACATTTTCTATGAAATAGCAAAGAGATTGCCTCGA
GTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTATGGATAGACCTGG
GGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAAATACTTGGGTGGTGA
TGGACCCTGTCTGTTTTTATCTTCTAAATGGCTTCCTCTAACTTTACTAG
GAACTTTTTTGAGTCTTATCCTTCCCAGGTTTGCTATCCCGGGTATTTTT
TTGTTTAAAATATCCCAACATTTAACTTGCCTTTCTGCCATTTTGGATTA
AACCTGGAAAATTAAATTTGGAAAGGGGGTTTCCCCTGGAAATCAAATTC
CCGGGGGGATGTTTCCCCTTT
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