EY685267

Overview
NameEY685267
Unique NameEY685267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RB40A_HUMAN (Ras-related protein Rab-40A OS=Homo sapiens GN=RAB40A PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 53/158 (33.54%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 588
            K +L+GD   GKS ++     G          G  + + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   I+VYDI N+ SFE   +W+++++    P +   L GN+  L   R+V  E+AQAYA+  G+ F E S     N+ + F E+A+
Sbjct:   16 KFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDGQRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGVPKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELAR 172          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAB36_MOUSE (Ras-related protein Rab-36 OS=Mus musculus GN=Rab36 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 57/174 (32.76%), Postives = 89/174 (51.15%), Query Frame = 1
Query:   73 H*NIATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQA--YAQENGLFFMETSAKTATNVNDIFYEIA 585
            H N  T G +   +K+V++GD+  GK+SL+ R  K  F    ++TIG  F  +   +       +IWDTAGQE++  +A  YYRGA   I  +D+T+  + E  ++W++++  +    +  + L G K DLL        EA+A   A E    +   SAKT  NV   F  +A
Sbjct:   47 HRNTGTAGLRL--SKVVVVGDLYVGKTSLIHRLCKNVFDHDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDVLRENEAGSCFIFLVGTKKDLLSGAACEQAEAEAVHLANEMQAEYWSVSAKTGENVKAFFSRVA 218          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.889e-19
Identity = 54/161 (33.54%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 594
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK DL  +R V  ++AQ  A+  G+ F+ETSAKT   V+D FY + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 163          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAS2_DROME (Ras-like protein 2 OS=Drosophila melanogaster GN=Ras64B PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.889e-19
Identity = 56/189 (29.63%), Postives = 104/189 (55.03%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMD-RPGGKDSECIM 675
            KLV++G  G GKS++ ++F++  F+   + TI  ++  Q   ++D   K +I DTAGQE + ++   Y R     ++V+ + + +SF+   K+ ++ L+ +      M + GNK DL   ++V+ EEAQ  ++   + ++E SAK   NV+  F+E+ + + + Q A  P   +  D +  GK   C+M
Sbjct:    7 KLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIEDSYTKQC-NIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAKLRVNVDQAFHELVRIVRKFQIAERP--FIEQDYKKKGKRKCCLM 192          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.889e-19
Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 624
            KLVL+GD G GK++ V R   G+F+    +T+G        A +   ++F++WDTAGQE++  L   YY      II++D+T++ +++    W ++L  +   N+ + L GNK D+ + RKV A+    + ++N L + + SAK+  N    F  +A++L     A NPS
Sbjct:    9 KLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-RKVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL-----AGNPS 170          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.889e-19
Identity = 57/173 (32.95%), Postives = 99/173 (57.23%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL---PRVQPAPNPS 624
            KLVL+GD G GK++ V R + G+F +   +TIG          N   +KF++WDTAGQE++  L   YY  A   II++D+T++ +++    W ++L  +   N+ + L GNK D+ + RKV A+    + ++N L + + SAK+  N    F  +A++L   P+++   +P+
Sbjct:    9 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFHTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-RKVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPA 178          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 57/191 (29.84%), Postives = 102/191 (53.40%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGGKDSECIMLLL 684
            KLV++G  G GKS+L ++F++  F+   + TI  ++ ++   V+    + +I DTAGQE + ++   Y R     ++V+ I ++ SF E  K + Q L+ +   +  + L GNKADL + R+V   EA +++  + + + E SAK   NV++ F ++ + + + Q    P        P  KD  C  +LL
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICTVDGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLENQRQVLRSEASSFSASHHMTYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPSP--PSAPRKKDGGCPCVLL 218          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RIT2_HUMAN (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 54/169 (31.95%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN 618
            K+V+LG  G GKS++ ++F+  QF +  + TI  A+ +Q + +++     +I DTAGQ  + ++   Y RG    II Y +T++ SF+ A K+ + + Q +    + + L GNK DL   R+V+ EE  + AQE    F ETSA     ++D F+ + + + + +  P+
Sbjct:   22 KVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREIRKKESMPS 189          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 54/161 (33.54%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 594
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK DL  +R V  ++AQ  A+  G+ F+ETSAKT   V D FY + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRSVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of EY685267 vs. ExPASy Swiss-Prot
Match: RASK_RAT (GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 54/161 (33.54%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  115 KLVLLGDVGAGKSSLVLRFVKGQFIEGGESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 594
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SFE    + ++++  + + ++ M L GNK DL  +R V  ++AQ  A+  G+ F+ETSAKT   V D FY + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of EY685267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB40A_HUMAN4.509e-1933.54Ras-related protein Rab-40A OS=Homo sapiens GN=RAB... [more]
RAB36_MOUSE4.509e-1932.76Ras-related protein Rab-36 OS=Mus musculus GN=Rab3... [more]
RASK_CYPCA5.889e-1933.54GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]
RAS2_DROME5.889e-1929.63Ras-like protein 2 OS=Drosophila melanogaster GN=R... [more]
GSP1_YARLI5.889e-1932.94GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
GSP1_CANGA5.889e-1932.95GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
RRAS_MOUSE7.691e-1929.84Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RIT2_HUMAN7.691e-1931.95GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
RAS_CARAU7.691e-1933.54Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RASK_RAT7.691e-1933.54GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685267 ID=EY685267; Name=EY685267; organism=Citrus sinensis; type=EST; length=921bp
CCACGCGTCCGTTTTTTTTTCCTTAATTTCCCCTTTAACCCCCCGATCCA
ATTTTGATTCGGTCTTCGATCACATTAAAACATCGCCACCACTGGAAACA
AAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAG
TCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCATTGAGGGGGGGGA
ATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATG
CTACTGTAAAATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCAT
AGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTA
CGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAG
AACTTCAGGCACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAAC
AAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGC
TTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAG
CAACCAATGTGAATGACATTTTCTATGAAATAGCAAAGAGATTGCCTCGA
GTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTATGGATAGACCTGG
GGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAAATACTTGGGTGGTGA
TGGACCCTGTCTGTTTTTATCTTCTAAATGGCTTCCTCTAACTTTACTAG
GAACTTTTTTGAGTCTTATCCTTCCCAGGTTTGCTATCCCGGGTATTTTT
TTGTTTAAAATATCCCAACATTTAACTTGCCTTTCTGCCATTTTGGATTA
AACCTGGAAAATTAAATTTGGAAAGGGGGTTTCCCCTGGAAATCAAATTC
CCGGGGGGATGTTTCCCCTTT
back to top