EY710424

Overview
NameEY710424
Unique NameEY710424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.929e-11
Identity = 28/58 (48.28%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  322 QLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            Q  ++    P     G+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC+ YP S+
Sbjct:   27 QAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSD 84          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.050e-11
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  322 QLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            Q  ++    P     G+CS+CAGK+ +G+VDQSDG++LDD+Q+  G++LTC+ YP S+
Sbjct:   27 QAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSD 84          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.050e-11
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  322 QLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            Q  ++    P     G+CS+CAGK+ +G+VDQSDG++LDD+Q+  G++LTC+ YP S+
Sbjct:   27 QAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSD 84          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.050e-11
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  322 QLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            Q  ++    P     G+CS+CAGK+VSG +DQSD SFLDD+Q+ AG++LTC  YP S+
Sbjct:   70 QAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSD 127          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.050e-11
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  322 QLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            Q  ++    P     G+CS+CAGK+VSG +DQSD SFLDD+Q+ AG++LTC  YP S+
Sbjct:   70 QAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSD 127          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 9.981e-11
Identity = 19/49 (38.78%), Postives = 27/49 (55.10%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G C+TCA +++SG VDQ D   +     + GY L C+ YP S+
Sbjct:   37 PASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSD 85          

HSP 2 Score: 40.817 bits (94), Expect = 9.981e-11
Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = 3
Query:  237 MAVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSC 359
            MA Y++++I  +G+   F A  DQ +LD+ + AGVDLP SC
Sbjct:    1 MATYQVEVIY-QGQSQTFTADSDQSVLDSAQAAGVDLPASC 40          
The following BLAST results are available for this feature:
BLAST of EY710424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
FER1_HYONI6.929e-1148.28Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_DATST9.050e-1146.55Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU9.050e-1146.55Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER1_ORYSJ9.050e-1151.72Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI9.050e-1151.72Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER2_SYNP69.981e-1138.78Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-115-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710424 ID=EY710424; Name=EY710424; organism=Citrus sinensis; type=EST; length=1026bp
ATTTCACTTGACCGCCACCCATTAACCCACTCGCCACCTCGCGCGCTCCG
CCGCTCGATCTCTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAG
CGCCCCGTGCATGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACT
TAATCAAGAGCCCAACCTCACTTGGATCTGTTAAGGGCATCTCCTAGACC
TTTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAA
GATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAAG
AAGACCAGTACATCCTCGATGCAACTGAGGAAGCAGGAGTCGACCTGCCC
TATTCCTGCCGCGCTTGGTGCTTGCTCGACGTGTGCTGGGAAATTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAATTG
GAGGCTGGTTATCTGCTGACTTGCATTACATACCCAAATTCAAATTGGAG
TGATTCTTTCTCAAAAGGAATAAGAGCTTTGCTTAATGCCTTTGCTGACA
ATTGGTTTTAAGGTATTTCAAATATAAATCGGGGATTCAGTGCCTTAATA
AGGTTAATAAGGTTTTCACTGGGGCCTTAAATATTTTTTTAAAATTCAAC
CTTTGTATCAGGGGGCAAGGAAATCAGTAAATTTTTTCATTTATATAAAC
AAATAACAGAGCATTTTGGGAATTTAAAAAAATAAAATAAAAGGGGCAGC
CCCTACCTATGAGGAATACCCAGCTATAAATAAAACATAGGCTAGAGGAT
AGAACTGTAGTCTCCTTTGATAGGGGTGTTCAATAAAAAAATTGAAATCT
AGTGGGTGTCATTGGTTTTTTTTAGAAATGTGTTGGGAGATGGTGGGAAA
ACAACCATCAGTATTGTTACCCTCAACATTTTTAATTTTCCCCTTATATC
TAGAATAAACTCCTCTCAACTCTTTTTTCACCTACTTATTGTAGGGTGAT
AATATTAAGTTAAATTAAGAAAAAGA
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