EY710424

Overview
NameEY710424
Unique NameEY710424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.162e-23
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+CAGK+VSGSVDQSD SFLDD+Q+  G++LTC  YP S+
Sbjct:   36 PYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSD 84          

HSP 2 Score: 59.6918 bits (143), Expect = 8.162e-23
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 3
Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            A YK+K I P+GE+ E E  +D Y+LDA EEAG+DLPYSCRA
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRA 41          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.030e-22
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+CAGK+VSGSVDQSD SFLDD Q+  G++LTC  YP S+
Sbjct:   88 PYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSD 136          

HSP 2 Score: 60.077 bits (144), Expect = 1.030e-22
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 3
Query:  234 SMAVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            +MA YK+K I P+GE  E E  +D Y+LDA EEAG+DLPYSCRA
Sbjct:   51 AMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRA 93          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.062e-22
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGK+V G+VDQSD SFLDD QL AGY+LTC+ YP+S+
Sbjct:   39 PYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSD 87          

HSP 2 Score: 54.299 bits (129), Expect = 1.062e-22
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 3
Query:  237 MAVYKIKLI-GPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MAVYK++LI   +G +   E  +D+YILDA EE G+DLPYSCRA
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRA 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.799e-22
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGK+VSG+VDQSD SFLDD+Q+E GY+LTC+ YP S+
Sbjct:   39 PYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSD 87          

HSP 2 Score: 51.2174 bits (121), Expect = 1.799e-22
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 3
Query:  243 VYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            VYK+ L+  +G E   +  +D+YILD  E+ G+DLPYSCRA
Sbjct:    4 VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRA 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.799e-22
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGKL+SG+VDQSD SFLDD Q++ G++LTC+ YP SN
Sbjct:   39 PYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSN 87          

HSP 2 Score: 52.373 bits (124), Expect = 1.799e-22
Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 3
Query:  237 MAVYKIKLIGPK-GEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            M  YK+KL   K G + E     DQYILDA EE G+DLPYSCRA
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRA 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.341e-22
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC+ YP S+
Sbjct:   39 PFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSD 87          

HSP 2 Score: 47.7506 bits (112), Expect = 2.341e-22
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 3
Query:  237 MAVYKIKLIGP-KGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA +K+ LI   +G  +  +  +D+YILDA EE G DLP+SCRA
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRA 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.341e-22
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGK+VSG+VDQS+ SFLDD+Q+EAGY+LTCI YP S+
Sbjct:   37 PASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSD 85          

HSP 2 Score: 50.0618 bits (118), Expect = 2.341e-22
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 3
Query:  237 MAVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA YK+ LI P GE   ++A +D+YILD+  +AG DLP SCRA
Sbjct:    1 MATYKVTLITPDGEV-SYDAPDDEYILDSAGDAGYDLPASCRA 42          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.965e-22
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+CAGK+VSG VDQSD SFLDD+Q+  G++LTC  YP S+
Sbjct:   36 PYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSD 84          

HSP 2 Score: 59.6918 bits (143), Expect = 3.965e-22
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 3
Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            A YK+K I P+GE+ E E  +D Y+LDA EEAG+DLPYSCRA
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRA 41          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.714e-22
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAG + SG++DQSD SFLDD+Q+EAGY+LTC+ YP S+
Sbjct:   39 PYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSD 87          

HSP 2 Score: 51.6026 bits (122), Expect = 6.714e-22
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 3
Query:  237 MAVYKIKLIGP-KGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA YK+ LI   +G     +  +D YILDA EEAG+DLPYSCRA
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRA 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.714e-22
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+CAGKLV+GSVDQSD SFLDD Q+E G++LTC+ YP S+
Sbjct:   36 PYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSD 84          

HSP 2 Score: 53.5286 bits (127), Expect = 6.714e-22
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 3
Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            A YK+KLI P G + EFE  +D YIL+  EE G+D+PYSCRA
Sbjct:    1 ASYKVKLITPDGPQ-EFECPDDVYILEHAEELGIDIPYSCRA 41          
The following BLAST results are available for this feature:
BLAST of EY710424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
FER3_RAPSA8.162e-2361.22Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER2_ARATH1.030e-2261.22Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_CYAPA1.062e-2267.35Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER1_NOSMU1.799e-2267.35Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_CYACA1.799e-2265.31Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER1_ANAVT2.341e-2271.43Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER1_SYNP22.341e-2269.39Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER_BRANA3.965e-2259.18Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER_SPIPL6.714e-2263.27Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_SAMNI6.714e-2263.27Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-115-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710424 ID=EY710424; Name=EY710424; organism=Citrus sinensis; type=EST; length=1026bp
ATTTCACTTGACCGCCACCCATTAACCCACTCGCCACCTCGCGCGCTCCG
CCGCTCGATCTCTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAG
CGCCCCGTGCATGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACT
TAATCAAGAGCCCAACCTCACTTGGATCTGTTAAGGGCATCTCCTAGACC
TTTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAA
GATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAAG
AAGACCAGTACATCCTCGATGCAACTGAGGAAGCAGGAGTCGACCTGCCC
TATTCCTGCCGCGCTTGGTGCTTGCTCGACGTGTGCTGGGAAATTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAATTG
GAGGCTGGTTATCTGCTGACTTGCATTACATACCCAAATTCAAATTGGAG
TGATTCTTTCTCAAAAGGAATAAGAGCTTTGCTTAATGCCTTTGCTGACA
ATTGGTTTTAAGGTATTTCAAATATAAATCGGGGATTCAGTGCCTTAATA
AGGTTAATAAGGTTTTCACTGGGGCCTTAAATATTTTTTTAAAATTCAAC
CTTTGTATCAGGGGGCAAGGAAATCAGTAAATTTTTTCATTTATATAAAC
AAATAACAGAGCATTTTGGGAATTTAAAAAAATAAAATAAAAGGGGCAGC
CCCTACCTATGAGGAATACCCAGCTATAAATAAAACATAGGCTAGAGGAT
AGAACTGTAGTCTCCTTTGATAGGGGTGTTCAATAAAAAAATTGAAATCT
AGTGGGTGTCATTGGTTTTTTTTAGAAATGTGTTGGGAGATGGTGGGAAA
ACAACCATCAGTATTGTTACCCTCAACATTTTTAATTTTCCCCTTATATC
TAGAATAAACTCCTCTCAACTCTTTTTTCACCTACTTATTGTAGGGTGAT
AATATTAAGTTAAATTAAGAAAAAGA
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