EY710424 | Citrus Genome Database

Overview


Name	EY710424
Unique Name	EY710424
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1026

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 6.714e-22
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGK+ +GSVDQSD SFLDD+Q+  G++LTC+ YP S+
Sbjct:   37 PYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSD 85

HSP 2 Score: 55.8398 bits (133), Expect = 6.714e-22
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:  237 MAVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA YK+KL G +G +   +  +DQYILDA EE G+DLPYSCRA
Sbjct:    1 MATYKVKLSG-EGVDKTIDCPDDQYILDAAEEQGIDLPYSCRA 42

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.488e-22
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+CAGK+  G+VDQ+DG+FLDD+QLE G++LTC+ YP S+
Sbjct:   83 PYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSD 131

HSP 2 Score: 55.0694 bits (131), Expect = 8.488e-22
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 3

Query:  201 FGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            FGLK +   + + MA YK+KLI P G   EF+  ++ YILD  EEAG DLPYSCRA
Sbjct:   34 FGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRA 88

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.737e-22
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGKL+ G VDQSD SFLDD+Q++AG++LTC+ YP SN
Sbjct:   38 PYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSN 86

HSP 2 Score: 50.8322 bits (120), Expect = 8.737e-22
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 3

Query:  240 AVYKIKLIGP-KGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            A YKI L+   +G +   E  +DQYILDA EE G+DLPYSCRA
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRA 43

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.737e-22
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC+ YP S+
Sbjct:   37 PFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSD 85

HSP 2 Score: 52.373 bits (124), Expect = 8.737e-22
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 3

Query:  237 MAVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA YK+ L+ P GE    +  ED+YILD  EE G+DLP+SCRA
Sbjct:    1 MATYKVTLVRPDGET-TIDVPEDEYILDVAEEQGLDLPFSCRA 42

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.925e-21
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGK+  GSVDQSD SFLDD QL  GY+LTCI YP S+
Sbjct:   39 PYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESD 87

HSP 2 Score: 52.373 bits (124), Expect = 1.925e-21
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 3

Query:  237 MAVYKIKLIGP-KGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA YKI L+   +G +  F+  ED YILDA EEAG++LPYSCRA
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRA 44

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.925e-21
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+CAGK+ +GSVDQSDG+FLDD+Q+  G++LTC+ YP S+
Sbjct:   36 PYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSD 84

HSP 2 Score: 54.299 bits (129), Expect = 1.925e-21
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 3

Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            A YK+KL+ P G   EFE  +D+YILD  EE G DLPYSCRA
Sbjct:    1 ATYKVKLVTPDGPV-EFECPDDEYILDRAEEEGHDLPYSCRA 41

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.259e-21
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACS+CAGK+V GSVDQSD SFLDD+Q+  G++LTC+ YP SN
Sbjct:   36 PYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSN 84

HSP 2 Score: 50.0618 bits (118), Expect = 3.259e-21
Identity = 26/42 (61.90%), Postives = 28/42 (66.67%), Query Frame = 3

Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            A YK+KLI P G   EF   +D YILD  EE G DLPYSCRA
Sbjct:    1 ASYKVKLITPDGPI-EFNCPDDVYILDRAEEEGHDLPYSCRA 41

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.145e-21
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+CAGK+VSGS+DQSD SFLDD+Q+  G++LTC+ YP S+
Sbjct:   74 PYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSD 122

HSP 2 Score: 54.6842 bits (130), Expect = 4.145e-21
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 3

Query:  165 TSLGSVKGIS*TFGLKCSPNFQASM-----------AVYKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            T L S +  + +F L+ +P    +M           A Y +KLI P+GE  E +  +D YILD  EE G+DLPYSCRA
Sbjct:    3 TVLSSPRAPAFSFSLRAAPATTVAMTRGASSRLRAQATYNVKLITPEGEV-ELQVPDDVYILDYAEEEGIDLPYSCRA 79

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.241e-21
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC+ YP S+
Sbjct:   39 PYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSD 87

HSP 2 Score: 48.9062 bits (115), Expect = 4.241e-21
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 3

Query:  237 MAVYKIKLIGP-KGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA YK+ L+   +G     +  +D YILDA EE G+DLPYSCRA
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRA 44

[Close]

BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.241e-21
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1

Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC+ YP S+
Sbjct:   39 PYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSD 87

HSP 2 Score: 48.9062 bits (115), Expect = 4.241e-21
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 3

Query:  237 MAVYKIKLIGP-KGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA YK+ L+   +G     +  +D YILDA EE G+DLPYSCRA
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRA 44

The following BLAST results are available for this feature:

BLAST of EY710424 vs. ExPASy Swiss-Prot

BLAST of EY710424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106


Match Name	E-value	Identity	Description
FER_GUITH	6.714e-22	61.22	Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3	[more]
FER_CAPAN	8.488e-22	57.14	Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP...	[more]
FER3_CYACA	8.737e-22	65.31	Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=...	[more]
FER_SYNLI	8.737e-22	63.27	Ferredoxin OS=Synechococcus lividus PE=1 SV=2	[more]
FER_PORPU	1.925e-21	67.35	Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2	[more]
FER_SOLAB	1.925e-21	57.14	Ferredoxin OS=Solanum abutiloides PE=1 SV=1	[more]
FER_SOLLS	3.259e-21	63.27	Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1	[more]
FER5_MAIZE	4.145e-21	59.18	Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE...	[more]
FER1_SYNP6	4.241e-21	65.31	Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271...	[more]
FER1_SYNE7	4.241e-21	65.31	Ferredoxin-1 OS=Synechococcus elongatus (strain PC...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-115-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY710424 ID=EY710424; Name=EY710424; organism=Citrus sinensis; type=EST; length=1026bp
ATTTCACTTGACCGCCACCCATTAACCCACTCGCCACCTCGCGCGCTCCG
CCGCTCGATCTCTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAG
CGCCCCGTGCATGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACT
TAATCAAGAGCCCAACCTCACTTGGATCTGTTAAGGGCATCTCCTAGACC
TTTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAA
GATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAAG
AAGACCAGTACATCCTCGATGCAACTGAGGAAGCAGGAGTCGACCTGCCC
TATTCCTGCCGCGCTTGGTGCTTGCTCGACGTGTGCTGGGAAATTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAATTG
GAGGCTGGTTATCTGCTGACTTGCATTACATACCCAAATTCAAATTGGAG
TGATTCTTTCTCAAAAGGAATAAGAGCTTTGCTTAATGCCTTTGCTGACA
ATTGGTTTTAAGGTATTTCAAATATAAATCGGGGATTCAGTGCCTTAATA
AGGTTAATAAGGTTTTCACTGGGGCCTTAAATATTTTTTTAAAATTCAAC
CTTTGTATCAGGGGGCAAGGAAATCAGTAAATTTTTTCATTTATATAAAC
AAATAACAGAGCATTTTGGGAATTTAAAAAAATAAAATAAAAGGGGCAGC
CCCTACCTATGAGGAATACCCAGCTATAAATAAAACATAGGCTAGAGGAT
AGAACTGTAGTCTCCTTTGATAGGGGTGTTCAATAAAAAAATTGAAATCT
AGTGGGTGTCATTGGTTTTTTTTAGAAATGTGTTGGGAGATGGTGGGAAA
ACAACCATCAGTATTGTTACCCTCAACATTTTTAATTTTCCCCTTATATC
TAGAATAAACTCCTCTCAACTCTTTTTTCACCTACTTATTGTAGGGTGAT
AATATTAAGTTAAATTAAGAAAAAGA