EY710424

Overview
NameEY710424
Unique NameEY710424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.494e-17
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACS+C GK+VSGSVD+S+GSFLDD Q+E G++LTCI  P S+
Sbjct:   35 PFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESD 83          

HSP 2 Score: 40.4318 bits (93), Expect = 2.494e-17
Identity = 22/40 (55.00%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  246 YKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            YK  L  P GE    +  E   ILDA EEAG DLP+SCRA
Sbjct:    2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRA 40          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.206e-16
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     GACSTCAG +  G+VDQSD SFLDD+QL   ++LTC+ YP S+
Sbjct:   37 PYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSD 85          

HSP 2 Score: 45.0542 bits (105), Expect = 1.206e-16
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 3
Query:  246 YKIKLIGPKGEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            Y + L  P G E E E  E  Y+LD+ E+ G+DLPYSCRA
Sbjct:    4 YTVTLSTPGGVE-EIEGDETTYVLDSAEDQGIDLPYSCRA 42          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 3.448e-16
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSV-DQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CSTCAGKLVSG+  +Q D +FLDD+QL AG+++TC+ YP  +
Sbjct:   39 PSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGD 88          

HSP 2 Score: 45.4394 bits (106), Expect = 3.448e-16
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 3
Query:  237 MAVYKIKLIGPK-GEEHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA YK+ LI  + G     E  +DQ ILDA EEAG+DLP SCRA
Sbjct:    1 MATYKVTLINEEEGINAILEVADDQTILDAGEEAGLDLPSSCRA 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 63.5438 bits (153), Expect = 8.040e-15
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+C GK+V G VDQSD  FLDD Q+  G+ L C+TYP SN
Sbjct:   39 PFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSN 87          

HSP 2 Score: 38.5058 bits (88), Expect = 8.040e-15
Identity = 18/44 (40.91%), Postives = 28/44 (63.64%), Query Frame = 3
Query:  237 MAVYKIKLIGPKGE-EHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA Y+++LI  K + +   E  E+  ILD  EE G++LP+SC +
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHS 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.045e-14
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+C GK+V G VDQSD  FLDD Q+  G+ L C+TYP SN
Sbjct:   39 PFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSN 87          

HSP 2 Score: 37.3502 bits (85), Expect = 1.045e-14
Identity = 17/44 (38.64%), Postives = 27/44 (61.36%), Query Frame = 3
Query:  237 MAVYKIKLIGPKGE-EHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA Y+++LI  K + +   E  ED  IL+   E G++LP+SC +
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHS 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.045e-14
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1
Query:  349 PIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            P     G+CS+C GK+V G VDQSD  FLDD Q+  G+ L C+TYP SN
Sbjct:   39 PFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSN 87          

HSP 2 Score: 38.5058 bits (88), Expect = 1.045e-14
Identity = 18/44 (40.91%), Postives = 27/44 (61.36%), Query Frame = 3
Query:  237 MAVYKIKLIGPKGE-EHEFEAQEDQYILDATEEAGVDLPYSCRA 365
            MA Y+++LI  K   +   E  E+  ILD  EE G++LP+SC +
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHS 44          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.340e-13
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  319 MQLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            + +  +++  P+    GACSTC GK+VSG+VDQS+GSFLDD Q+E GY+LTCI  P S+
Sbjct:   24 IDIASEKADLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESD 82          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.668e-13
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  319 MQLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            + +  +++  P+    GACSTC GK+VSG+VDQS+GSFLDD Q+E GY+LTCI  P S+
Sbjct:   24 IDIGSEKADLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESD 82          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.267e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  322 QLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            Q  ++    P     G+CS+CAGKLVSG +DQSD SFLDD+Q+EAG++LTC  YP S+
Sbjct:   73 QAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSD 130          
BLAST of EY710424 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.185e-12
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  322 QLRKQESTCPIPAALGACSTCAGKLVSGSVDQSDGSFLDDNQLEAGYLLTCITYPNSN 495
            Q  ++    P     G+CS+CAGK+V+GSVDQSD SFLDD+Q+EAG++LTC  YP+++
Sbjct:   76 QAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSAD 133          
The following BLAST results are available for this feature:
BLAST of EY710424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
FER1_EQUAR2.494e-1761.22Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_RHOPL1.206e-1657.14Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER2_APHSA3.448e-1654.00Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FERH_ANASP8.040e-1555.10Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_FREDI1.045e-1455.10Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERH_ANAVT1.045e-1455.10Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_EQUTE4.340e-1354.24Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR5.668e-1354.24Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FER_WHEAT6.267e-1255.17Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER_SILPR8.185e-1253.45Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-115-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710424 ID=EY710424; Name=EY710424; organism=Citrus sinensis; type=EST; length=1026bp
ATTTCACTTGACCGCCACCCATTAACCCACTCGCCACCTCGCGCGCTCCG
CCGCTCGATCTCTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAG
CGCCCCGTGCATGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACT
TAATCAAGAGCCCAACCTCACTTGGATCTGTTAAGGGCATCTCCTAGACC
TTTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAA
GATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAAG
AAGACCAGTACATCCTCGATGCAACTGAGGAAGCAGGAGTCGACCTGCCC
TATTCCTGCCGCGCTTGGTGCTTGCTCGACGTGTGCTGGGAAATTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAATTG
GAGGCTGGTTATCTGCTGACTTGCATTACATACCCAAATTCAAATTGGAG
TGATTCTTTCTCAAAAGGAATAAGAGCTTTGCTTAATGCCTTTGCTGACA
ATTGGTTTTAAGGTATTTCAAATATAAATCGGGGATTCAGTGCCTTAATA
AGGTTAATAAGGTTTTCACTGGGGCCTTAAATATTTTTTTAAAATTCAAC
CTTTGTATCAGGGGGCAAGGAAATCAGTAAATTTTTTCATTTATATAAAC
AAATAACAGAGCATTTTGGGAATTTAAAAAAATAAAATAAAAGGGGCAGC
CCCTACCTATGAGGAATACCCAGCTATAAATAAAACATAGGCTAGAGGAT
AGAACTGTAGTCTCCTTTGATAGGGGTGTTCAATAAAAAAATTGAAATCT
AGTGGGTGTCATTGGTTTTTTTTAGAAATGTGTTGGGAGATGGTGGGAAA
ACAACCATCAGTATTGTTACCCTCAACATTTTTAATTTTCCCCTTATATC
TAGAATAAACTCCTCTCAACTCTTTTTTCACCTACTTATTGTAGGGTGAT
AATATTAAGTTAAATTAAGAAAAAGA
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