EY685266

Overview
NameEY685266
Unique NameEY685266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BACP2 (Thymidylate synthase OS=Bacillus pumilus (strain SAFR-032) GN=thyA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.807e-42
Identity = 78/142 (54.93%), Postives = 106/142 (74.65%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++SAWNP ++  MALPPCH   QFY++NG+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V +L PG+F+H +GDAH+Y+NH+  +  QL++  +  P L+I  + K I  F  +DF L  YDPH  I+ +++V
Sbjct:  123 PNSRRLIVSAWNPGEIDQMALPPCHCLFQFYVSNGKLSCQLYQRSADIFLGVPFNIASYALLTMMIAKVTNLEPGEFVHTLGDAHIYQNHLPQVNMQLEREERALPQLRITRDVKSIFDFTFDDFVLENYDPHPHIKGEVSV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_PSEA7 (Thymidylate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=thyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.666e-42
Identity = 80/142 (56.34%), Postives = 104/142 (73.24%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PG+FI   GD H+Y NH+   + QL + P P P +K+NPE KD+  F  EDF+L+GY  H  I+  +AV
Sbjct:  123 PDSRRLIVSAWNPALIDEMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVAGLRPGEFIWTGGDCHLYANHLEQADLQLTREPLPLPSMKLNPEVKDLFDFRFEDFELVGYQAHPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_OCEIH (Thymidylate synthase OS=Oceanobacillus iheyensis GN=thyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.666e-42
Identity = 80/142 (56.34%), Postives = 101/142 (71.13%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR ++SAWNP D+  MALPPCH   QFY++NG+LSCQ+YQRSAD+ LGVPFNIASYALLT +IAH C L  GDF+H  GDAH+Y NHV  +E QL++  + FP L IN +K  I     +D  +  Y+PH  I+  +AV
Sbjct:  176 PNSRRHIVSAWNPEDIPTMALPPCHTLFQFYVSNGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHECGLEVGDFVHTFGDAHIYSNHVEQVETQLEREIRDFPQLIINKDKNSIFEMDLDDLVIENYNPHPSIKAPIAV 317          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_NITEC (Thymidylate synthase OS=Nitrosomonas eutropha (strain C91) GN=thyA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.789e-42
Identity = 80/142 (56.34%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWN  DL  MAL PCH+  QFY+ +G+LSCQ+YQRSAD+ LGVPFNIASY+LLT MIA  C+L PG+FIH  GDAH+Y NH+     QL + PK  PI+++NP  ++I  F  EDF L  YDPH  I+  +AV
Sbjct:  123 PDSRRMIISAWNVGDLDKMALAPCHVLFQFYVVDGKLSCQLYQRSADIFLGVPFNIASYSLLTLMIAQCCNLKPGEFIHTFGDAHLYLNHLEQARLQLTREPKSLPIMELNPAIRNILDFRYEDFTLHNYDPHPPIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_MESSB (Thymidylate synthase OS=Mesorhizobium sp. (strain BNC1) GN=thyA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.789e-42
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 3
Query:   12 EYPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            E P  RR +++AWNP+++  MALPPCH   QF++A G LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PGDF+H +GDAH+Y+NH     EQL + PKP P + INPE  D+ +F  EDF+L GY     I   +AV
Sbjct:  121 ENPYSRRHIVTAWNPAEIDGMALPPCHCLFQFHVAEGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGDFVHTLGDAHLYKNHFDQAREQLTRTPKPLPTMWINPEVDDLFAFGYEDFRLEGYVADPTIRAPIAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS_LEIMA (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Leishmania major PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.789e-42
Identity = 80/144 (55.56%), Postives = 105/144 (72.92%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMAN--GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PNDRR++++AWNP  L+ MALPPCH+ AQFY+     ELSC +YQRS DMGLGVPFNIASYALLT +IA    L PG+ +H +GDAHVYRNHV  L+ QL+++P  FP L    E++ ++ +   D ++I Y PH  I+M+MAV
Sbjct:  377 PNDRRLLVTAWNPCALQKMALPPCHLLAQFYVNTDTSELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYRNHVDALKAQLERVPHAFPTLIFKEERQYLEDYELTDMEVIDYVPHPAIKMEMAV 520          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_PARD8 (Thymidylate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=thyA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.254e-42
Identity = 81/142 (57.04%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RRI++SAWN +DL  M LPPCH F QFY+ANG LS Q+YQRSAD+ LGVPFNIASYALL  M+A    L  GDF+H +GDAH+Y NH+  ++ QL + P+  P ++INP+ K I  F  EDF L GYDPH  I+ ++AV
Sbjct:  123 PDSRRIIVSAWNVADLDNMNLPPCHAFFQFYVANGRLSLQLYQRSADIFLGVPFNIASYALLLQMMAQATGLKAGDFVHTLGDAHIYSNHLEQVKLQLTREPRALPRMEINPDVKSIFDFKFEDFNLTGYDPHPHIKGEVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_METC4 (Thymidylate synthase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=thyA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.254e-42
Identity = 79/142 (55.63%), Postives = 101/142 (71.13%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+DL  MAL PCH   QFY+A+G LSCQ+YQRSAD  LGVPFNIASYALLT M+A V  L  GDF+H  GDAH+Y NH+     QL + P+P P L++NPE + +  F  ED  + GY+PH  I+  +AV
Sbjct:  123 PDSRRLIVSAWNPADLDRMALAPCHCLFQFYVADGRLSCQLYQRSADAFLGVPFNIASYALLTAMMAQVTGLKAGDFVHTFGDAHLYANHLEQTHLQLSREPRPLPRLRLNPEVRSLFDFRFEDIVIEGYEPHPAIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_RHOBA (Thymidylate synthase OS=Rhodopirellula baltica GN=thyA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.168e-42
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P  RR+V+SAWN +D+  MALPPCH+  QFY++ G LSCQ+YQRSAD+ LGVPFNIASYA+LT M+AHV  L PG+F+H +GD H+Y NH     EQL + P+P P   I  +   +  F  +DF+L  YDPH  I+  +AV
Sbjct:  123 PRSRRLVVSAWNVADVPKMALPPCHLLFQFYVSGGRLSCQLYQRSADLFLGVPFNIASYAMLTSMMAHVTGLKPGEFVHTLGDVHLYSNHFDQAREQLSRTPRPLPTFHIKRDVASVTDFQFDDFELTNYDPHPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_MAGSA (Thymidylate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=thyA PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 8.168e-42
Identity = 78/142 (54.93%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+D++ MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L  G F+H  GDAH+Y NH+     QL + P P P L++NPE KD+ +F  +D K++ Y  H  I   +AV
Sbjct:  123 PDSRRLIVSAWNPADIESMALPPCHCLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMVAQVTGLEVGAFVHTFGDAHLYSNHMEQAALQLSRAPLPLPRLELNPEVKDLFAFTMDDIKVVDYQCHAHIAAPVAV 264          
The following BLAST results are available for this feature:
BLAST of EY685266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TYSY_BACP22.807e-4254.93Thymidylate synthase OS=Bacillus pumilus (strain S... [more]
TYSY_PSEA73.666e-4256.34Thymidylate synthase OS=Pseudomonas aeruginosa (st... [more]
TYSY_OCEIH3.666e-4256.34Thymidylate synthase OS=Oceanobacillus iheyensis G... [more]
TYSY_NITEC4.789e-4256.34Thymidylate synthase OS=Nitrosomonas eutropha (str... [more]
TYSY_MESSB4.789e-4256.94Thymidylate synthase OS=Mesorhizobium sp. (strain ... [more]
DRTS_LEIMA4.789e-4255.56Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_PARD86.254e-4257.04Thymidylate synthase OS=Parabacteroides distasonis... [more]
TYSY_METC46.254e-4255.63Thymidylate synthase OS=Methylobacterium chloromet... [more]
TYSY_RHOBA8.168e-4253.52Thymidylate synthase OS=Rhodopirellula baltica GN=... [more]
TYSY_MAGSA8.168e-4254.93Thymidylate synthase OS=Magnetospirillum magneticu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685266 ID=EY685266; Name=EY685266; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGGAATATCCAAATGATCGGCGGATTGTACTCTCGGCTTGG
AATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGC
TCAGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCT
CTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTC
TTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCGATTTCAT
TCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCAGGCCCCTGG
AGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAAGATCAAT
CCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCAAACTTAT
AGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTATAGATCT
CTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGGCAATAAT
TGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGCAGAGTTT
TATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTTAAATAGT
GCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGTGGTTCTA
AGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCACCTTTCCTTTTCCC
TTGTTTACTGAAAACTATCAAAGTATGTACTTCTGCTCAAAGTCTCAAAT
GCTCTTTTTGAAAAAGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGCCGCCCTAAAGGAACCAAGTTTCCTACCCCGT
GGCTTGGGAACCAAAAATTCTTTCAAAAAGGGGCCCTAAATTTCAATTCC
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