EY685266

Overview
NameEY685266
Unique NameEY685266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BART1 (Thymidylate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=thyA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.168e-42
Identity = 79/144 (54.86%), Postives = 103/144 (71.53%), Query Frame = 3
Query:   12 EYPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            E P+ RR+++SAWNP+ ++ MALPPCH   QFY+  G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L  GDFIH  GDAH+Y NH    + QL ++P   P ++INP   D+ SF  EDF+L+ Y+ H  I+  +A+
Sbjct:  121 EKPDSRRLIVSAWNPALIEEMALPPCHCLFQFYIDEGKLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVSGLKVGDFIHTFGDAHLYSNHFEQAQYQLSRIPNALPCMRINPAVTDLFSFKFEDFELLNYEAHPHIKAPVAI 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_ALHEH (Thymidylate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=thyA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.168e-42
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 3
Query:   12 EYPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            E+P+ RR ++SAWN  +L  MALPPCH   QFY+A G LSCQ+YQRSAD+ LG+PFNIASYALLT M+A VCDL PG+FI   GD H+Y NH+   + QLQ+ P P P L++NPE +D+ +F  ED  L GY  H  I+  +AV
Sbjct:  121 EHPDSRRHLVSAWNVGELPNMALPPCHTLFQFYVAEGRLSCQLYQRSADIFLGLPFNIASYALLTHMVAQVCDLKPGEFIWTGGDCHLYTNHLEQADRQLQREPLPLPRLRLNPEVRDLFAFRYEDIALEGYQHHPPIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_AGABI (Thymidylate synthase OS=Agaricus bisporus GN=tms1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.168e-42
Identity = 88/151 (58.28%), Postives = 104/151 (68.87%), Query Frame = 3
Query:   12 EYPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM------ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILK-INPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            E P DRRI+LSAWNP D+  MALPPCHM  QFY+      A  ELSC M+QRSAD+GLG+PFNIASYALLT MIAHV      + I  +GDAHVYR+HV  LE QLQ+ P+PFP L+       DI+ F   DF + GY+PH  I MKM+V
Sbjct:  146 ENPTDRRIILSAWNPKDIPSMALPPCHMLCQFYVHLPADTAKPELSCLMFQRSADLGLGIPFNIASYALLTHMIAHVTGTTARELIIQLGDAHVYRDHVEALEVQLQREPRPFPKLRWARDGITDIEDFEYSDFVIEGYNPHPSIAMKMSV 296          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BACSK (Thymidylate synthase OS=Bacillus clausii (strain KSM-K16) GN=thyA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.067e-41
Identity = 76/142 (53.52%), Postives = 106/142 (74.65%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR++++AWN ++++ MAL PCH   QFY+ +G+LSCQ+YQRSAD+ LGVPFNI+SYALLT M+A VC L PG+FIH  GDAH+Y NH+   + QL + PK  P + INPE  D+ +F  +DF+L  YDP+  I+ +++V
Sbjct:  123 PNSRRLIVNAWNVAEIEEMALAPCHCLFQFYVNDGKLSCQLYQRSADIFLGVPFNISSYALLTMMMAQVCGLKPGEFIHTFGDAHLYNNHIEQTKLQLTRKPKQLPTMHINPEVTDLFAFTYDDFELKHYDPYPHIKAEVSV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_FLAPJ (Thymidylate synthase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=thyA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.393e-41
Identity = 85/155 (54.84%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLK-------------LMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++SAWNPS L               +ALPPCH F QFY++ G+LSCQ+YQRSAD+ LGVPFNIASYAL T MIA VCDL  G+FIH  GDAH+Y NH   +  QL + PKP P + +NP  K+I  F  EDFKL GY+ H  I+  +AV
Sbjct:  120 PNSRRMLVSAWNPSVLPDTTKSFAENVANAKVALPPCHAFFQFYVSEGKLSCQLYQRSADIFLGVPFNIASYALFTMMIAQVCDLQAGEFIHTFGDAHIYNNHFEQVALQLSREPKPLPKMILNPAVKNIFDFKFEDFKLEGYESHAHIKGAVAV 274          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BACTN (Thymidylate synthase OS=Bacteroides thetaiotaomicron GN=thyA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.393e-41
Identity = 82/142 (57.75%), Postives = 104/142 (73.24%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RRI++SAWN +DLK M LPPCH F QFY+A+G LS Q+YQRSAD+ LGVPFNIASYALL  M+A V  L  G+FIH +GDAH+Y NH+  ++ QL + P+  P +KINP+ K I  F  EDF+L+ YDPH  I   +AV
Sbjct:  123 PDSRRIIVSAWNVADLKNMNLPPCHAFFQFYVADGRLSLQLYQRSADIFLGVPFNIASYALLLQMMAQVTGLKAGEFIHTLGDAHIYLNHLDQVKLQLSREPRALPQMKINPDVKSIYDFQFEDFELVNYDPHPHIAGIVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_XYLFT (Thymidylate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=thyA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 79/142 (55.63%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+V+SAWN +DL  MAL PCH   QFY+ANG+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L  GDF+H +GDAH+Y NHV     QL ++P+P P+L++N    D+  F  +D  + GYDP+  I+  +AV
Sbjct:  123 PDSRRLVISAWNVADLPQMALVPCHALFQFYVANGKLSCQLYQRSADIFLGVPFNIASYALLTHMLAQVTGLVVGDFVHTLGDAHLYANHVEQASVQLGRVPRPQPVLRLNQAVTDLFDFTYDDIVIEGYDPYPAIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_SCHPO (Probable thymidylate synthase OS=Schizosaccharomyces pombe GN=SPAC15E1.04 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 83/152 (54.61%), Postives = 108/152 (71.05%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANG-------ELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKD---IDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P DRRI+LSAWNP  +  MALPPCH+F QFY++         +LS  MYQRSADMGLGVPFNIASY+LLT MIAH+C     +F+HV+GD H+Y +H+  L+ QL+++PK FP L    + KD   IDSF  +DF + GY+P+  I+MKM+V
Sbjct:  474 PYDRRIILSAWNPLAIPEMALPPCHIFCQFYVSEPCKPGGKPQLSSMMYQRSADMGLGVPFNIASYSLLTHMIAHMCGYEAAEFVHVMGDCHIYNDHLEALQTQLERVPKAFPKLFFKRDAKDIGSIDSFSVDDFAVEGYNPYGPIKMKMSV 625          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BARBK (Thymidylate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=thyA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR++++AWNP+ +  MALPPCH   QF +ANG+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L  GDFIH +GDAH+Y NH    ++QL + P   P+++INP+  D+ SF  EDF+L+ Y+    I+  +AV
Sbjct:  123 PNSRRLIVTAWNPALIDEMALPPCHCLFQFQVANGKLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKVGDFIHTLGDAHLYSNHFEQAKQQLSRTPGILPLIRINPKVTDLFSFQFEDFELLNYEAQPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_XANCP (Thymidylate synthase OS=Xanthomonas campestris pv. campestris GN=thyA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.104e-41
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+V+SAWN  +L  MAL PCH   QFY+ +G+LSCQ+YQRS D+ LGVPFNIASYALLT M+A    L  GDF+H +GDAH+Y NH     EQL + P+P P L++NP+  D+ +F  ED  + GYDPH  I+  +AV
Sbjct:  123 PDSRRLVISAWNVGELPQMALMPCHSLFQFYVVDGKLSCQLYQRSGDIFLGVPFNIASYALLTHMVAQATGLGVGDFVHTLGDAHLYSNHFEQAREQLTRTPRPLPTLRLNPDVTDLFAFRFEDIAIDGYDPHPAIKAPVAV 264          
The following BLAST results are available for this feature:
BLAST of EY685266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TYSY_BART18.168e-4254.86Thymidylate synthase OS=Bartonella tribocorum (str... [more]
TYSY_ALHEH8.168e-4256.25Thymidylate synthase OS=Alkalilimnicola ehrlichei ... [more]
TYSY_AGABI8.168e-4258.28Thymidylate synthase OS=Agaricus bisporus GN=tms1 ... [more]
TYSY_BACSK1.067e-4153.52Thymidylate synthase OS=Bacillus clausii (strain K... [more]
TYSY_FLAPJ1.393e-4154.84Thymidylate synthase OS=Flavobacterium psychrophil... [more]
TYSY_BACTN1.393e-4157.75Thymidylate synthase OS=Bacteroides thetaiotaomicr... [more]
TYSY_XYLFT1.820e-4155.63Thymidylate synthase OS=Xylella fastidiosa (strain... [more]
TYSY_SCHPO1.820e-4154.61Probable thymidylate synthase OS=Schizosaccharomyc... [more]
TYSY_BARBK1.820e-4155.63Thymidylate synthase OS=Bartonella bacilliformis (... [more]
TYSY_XANCP3.104e-4154.23Thymidylate synthase OS=Xanthomonas campestris pv.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685266 ID=EY685266; Name=EY685266; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGGAATATCCAAATGATCGGCGGATTGTACTCTCGGCTTGG
AATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGC
TCAGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCT
CTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTC
TTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCGATTTCAT
TCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCAGGCCCCTGG
AGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAAGATCAAT
CCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCAAACTTAT
AGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTATAGATCT
CTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGGCAATAAT
TGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGCAGAGTTT
TATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTTAAATAGT
GCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGTGGTTCTA
AGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCACCTTTCCTTTTCCC
TTGTTTACTGAAAACTATCAAAGTATGTACTTCTGCTCAAAGTCTCAAAT
GCTCTTTTTGAAAAAGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGCCGCCCTAAAGGAACCAAGTTTCCTACCCCGT
GGCTTGGGAACCAAAAATTCTTTCAAAAAGGGGCCCTAAATTTCAATTCC
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