EY685266

Overview
NameEY685266
Unique NameEY685266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_XANC8 (Thymidylate synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=thyA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.104e-41
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+V+SAWN  +L  MAL PCH   QFY+ +G+LSCQ+YQRS D+ LGVPFNIASYALLT M+A    L  GDF+H +GDAH+Y NH     EQL + P+P P L++NP+  D+ +F  ED  + GYDPH  I+  +AV
Sbjct:  123 PDSRRLVISAWNVGELPQMALMPCHSLFQFYVVDGKLSCQLYQRSGDIFLGVPFNIASYALLTHMVAQATGLGVGDFVHTLGDAHLYSNHFEQAREQLTRTPRPLPTLRLNPDVTDLFAFRFEDIAIDGYDPHPAIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_XANAC (Thymidylate synthase OS=Xanthomonas axonopodis pv. citri GN=thyA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.054e-41
Identity = 78/142 (54.93%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+V+SAWN  +L  MAL PCH   QFY+ NG+LSCQ+YQRS D+ LGVPFNIASYALLT M+A    L  GDF+H +GDAH+Y NH     EQL + P+  P L++NPE  D+ +F  ED  + GYDPH  I+  +AV
Sbjct:  123 PDSRRLVISAWNVGELPQMALMPCHSLFQFYVVNGKLSCQLYQRSGDIFLGVPFNIASYALLTHMVAQATGLGVGDFVHTLGDAHLYSNHFEQAREQLTRTPRALPSLRLNPEVTDLFAFRFEDIAIEGYDPHPAIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_LACS1 (Thymidylate synthase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=thyA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.054e-41
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR++++AWNP D+ L ALPPCH   QFY+ +G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA    L  G+F+H +GDAH+Y NH+  + EQLQ+ P   P L +NPEKK+I  F  ED K+  Y  H  I+  +AV
Sbjct:  177 PDSRRMIVTAWNPEDVPLSALPPCHTLFQFYVNDGKLSCQLYQRSADVFLGVPFNIASYALLTHMIARETGLEVGEFVHTLGDAHIYLNHLDQVNEQLQRKPNDAPTLWLNPEKKNIMDFEMEDIKVKNYHSHSAIKAPVAV 318          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_HYPNA (Thymidylate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=thyA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.054e-41
Identity = 76/142 (53.52%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++SAWNP+D+  MALPPCH   QF + +G+L+CQ+YQRSAD+ LGVPFNIASYALLT M+A    L PG+F+H  GDAH+Y NH+   E QL + P+  P + +NP+K D+  +  EDF++ GY PH  I+  +AV
Sbjct:  123 PNSRRLIVSAWNPADVNDMALPPCHCLFQFNVMDGKLNCQLYQRSADVFLGVPFNIASYALLTMMMARATGLQPGEFVHTFGDAHLYLNHLEQAELQLTREPRDLPTIHMNPDKADLFGWEYEDFRVDGYAPHPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS_LEIAM (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.054e-41
Identity = 78/144 (54.17%), Postives = 103/144 (71.53%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM--ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PNDRR++ +AWNP  L  MALPPCH+ AQFY+     ELSC +YQRS DMGLGVPFNIASYALLT +IA    L PG+ +H +GDAHVYR+H+  L+ QL+++P  FP L    E++ ++ +   D ++I Y PH  I+M+MAV
Sbjct:  377 PNDRRLLFTAWNPCALHKMALPPCHLLAQFYVNTEKSELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYRSHIDALKAQLERVPHAFPTLVFKEERQFLEDYELMDMEVIDYVPHPPIKMEMAV 520          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_LACBA (Thymidylate synthase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=thyA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.294e-41
Identity = 77/143 (53.85%), Postives = 102/143 (71.33%), Query Frame = 3
Query:   15 YPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            +P+ RR+++SAWNP+D+  MALPPCH   QFY+ +G+LSCQ+YQRSAD+ LGVPFNIASYALLT +IA    L  GDF+H +GDAH+Y NHV  ++ QL + P   P L +NP+K  I  +   D K+ GYDP   I+  +AV
Sbjct:  174 HPDSRRMIVSAWNPADVPSMALPPCHTLFQFYVNDGKLSCQLYQRSADIFLGVPFNIASYALLTSLIAKEVGLEVGDFVHTLGDAHIYSNHVEQIKTQLARTPHAAPQLWLNPDKSSIFDYEMSDIKVTGYDPEPAIKAPVAV 316          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BARQU (Thymidylate synthase OS=Bartonella quintana GN=thyA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.294e-41
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ ++ MALPPCH F QFY+A+ +LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L  GDFIH +GDAH+Y NH      QL ++P   P + INP   D+ SF  EDF+L+ Y+    I+  +AV
Sbjct:  123 PDSRRLIVSAWNPALIEEMALPPCHCFFQFYVADDKLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVSGLKAGDFIHTLGDAHLYSNHFEQARYQLSRIPNALPSMLINPSVTDLFSFKFEDFELLNYEAQPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_LACRD (Thymidylate synthase OS=Lactobacillus reuteri (strain DSM 20016) GN=thyA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.915e-41
Identity = 79/142 (55.63%), Postives = 101/142 (71.13%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP D+  MALPPCH   QFY+ +G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIAH C L PG+F+H +GDAH+Y NH+  ++EQL + P   P L +  E K ID +   D KL GY     I+  +AV
Sbjct:  179 PDSRRMIVSAWNPEDVPSMALPPCHTMFQFYVNDGKLSCQLYQRSADIFLGVPFNIASYALLTHMIAHQCGLEPGEFVHTLGDAHIYLNHLDQVKEQLTRTPHEAPKLILPAEPKPIDQYEMTDIKLEGYTHEPAIKAPVAV 320          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_AGRT5 (Thymidylate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=thyA PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.915e-41
Identity = 76/142 (53.52%), Postives = 102/142 (71.83%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR ++SAWNP+ +  MALPPCH   QFY+++G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PGDF+H +GDAH+Y NH    + Q+ + PK  P +++NP+ K++  F  EDF L  Y+    I+  +AV
Sbjct:  123 PNSRRHIVSAWNPALVDEMALPPCHCLFQFYVSDGKLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVVGLKPGDFVHTLGDAHIYANHFEQAQLQMTRTPKALPTMRLNPDVKNLFGFKFEDFTLENYEADSSIKAPIAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_XANOR (Thymidylate synthase OS=Xanthomonas oryzae pv. oryzae GN=thyA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.540e-40
Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+V+SAWN  +L  MAL PCH   QFY+ NG+LSCQ+YQRS D+ LGVPFNIASYALLT M+A    L  GDF+H +GDAH+Y NH     +QL + P+  P L++NPE  D+ +F  ED  + GYDPH  I+  +AV
Sbjct:  123 PDSRRLVISAWNVGELPQMALMPCHSLFQFYVVNGKLSCQLYQRSGDIFLGVPFNIASYALLTHMVAQATGLGVGDFVHTLGDAHLYSNHFDQARKQLTRTPRALPTLRLNPEVTDLFAFRFEDIAIEGYDPHPAIKAPVAV 264          
The following BLAST results are available for this feature:
BLAST of EY685266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TYSY_XANC83.104e-4154.23Thymidylate synthase OS=Xanthomonas campestris pv.... [more]
TYSY_XANAC4.054e-4154.93Thymidylate synthase OS=Xanthomonas axonopodis pv.... [more]
TYSY_LACS14.054e-4155.63Thymidylate synthase OS=Lactobacillus salivarius s... [more]
TYSY_HYPNA4.054e-4153.52Thymidylate synthase OS=Hyphomonas neptunium (stra... [more]
DRTS_LEIAM4.054e-4154.17Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_LACBA5.294e-4153.85Thymidylate synthase OS=Lactobacillus brevis (stra... [more]
TYSY_BARQU5.294e-4155.63Thymidylate synthase OS=Bartonella quintana GN=thy... [more]
TYSY_LACRD6.915e-4155.63Thymidylate synthase OS=Lactobacillus reuteri (str... [more]
TYSY_AGRT56.915e-4153.52Thymidylate synthase OS=Agrobacterium tumefaciens ... [more]
TYSY_XANOR1.540e-4054.23Thymidylate synthase OS=Xanthomonas oryzae pv. ory... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685266 ID=EY685266; Name=EY685266; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGGAATATCCAAATGATCGGCGGATTGTACTCTCGGCTTGG
AATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGC
TCAGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCT
CTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTC
TTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCGATTTCAT
TCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCAGGCCCCTGG
AGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAAGATCAAT
CCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCAAACTTAT
AGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTATAGATCT
CTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGGCAATAAT
TGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGCAGAGTTT
TATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTTAAATAGT
GCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGTGGTTCTA
AGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCACCTTTCCTTTTCCC
TTGTTTACTGAAAACTATCAAAGTATGTACTTCTGCTCAAAGTCTCAAAT
GCTCTTTTTGAAAAAGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGCCGCCCTAAAGGAACCAAGTTTCCTACCCCGT
GGCTTGGGAACCAAAAATTCTTTCAAAAAGGGGCCCTAAATTTCAATTCC
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