EY685266

Overview
NameEY685266
Unique NameEY685266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_METPP (Thymidylate synthase OS=Methylibium petroleiphilum (strain PM1) GN=thyA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.482e-40
Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGE-------LSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RRI++SAWN +DL  MAL PCH F QFY+A G+       LSCQ+YQRSAD+ LGVPFNIASYALLT M+A  CDL  GDF+   GD H+Y NH   +E QL + P+P+P L+I      I  +  EDF++IGYDPH  I+  +AV
Sbjct:  135 PDSRRIIVSAWNVADLPKMALMPCHAFFQFYVAPGDSPSARGRLSCQLYQRSADIFLGVPFNIASYALLTHMLAQQCDLEVGDFVWTGGDCHIYSNHREQVELQLSRAPRPYPTLQIKRRPPSIFDYAYEDFEIIGYDPHPAIKAPVAV 283          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_IIV6 (Probable thymidylate synthase 225R OS=Invertebrate iridescent virus 6 GN=IIV6-225R PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.482e-40
Identity = 80/152 (52.63%), Postives = 110/152 (72.37%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMA---NG--ELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCD-----LAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P DRR++L AWNP D   MALPPCH  A F ++   NG  ELSC ++QRSADMGLGVPFNIASYALLT +IAHV       + PGDF+H + + H+Y+NH++ L EQ+ ++P+ FP L+I  + K+ID+F ++DF L  Y+P+  +EM+MA+
Sbjct:  144 PWDRRMILLAWNPKDNSKMALPPCHCIAHFDVSSKINGKRELSCHLFQRSADMGLGVPFNIASYALLTHIIAHVSSTNTELIVPGDFVHTLSNVHIYKNHIKALTEQISRIPRKFPTLEIINKNKNIDAFSSKDFVLKDYNPYPALEMEMAL 295          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY2_BACAM (Thymidylate synthase 2 OS=Bacillus amyloliquefaciens GN=thyA2 PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.854e-40
Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++SAWN  ++  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIAHV  L PG+F+H  GD H+Y+NHV  +  QL +  +P P L+       I  F  EDF +  YDPH  I+  ++V
Sbjct:  123 PNSRRLIVSAWNVGEIDRMALPPCHCLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTMMIAHVTGLEPGEFVHTFGDVHIYQNHVEQVNLQLTRDVRPLPKLRFARNVDSIFDFAFEDFIIEDYDPHPHIKGAVSV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BACA2 (Thymidylate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=thyA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.645e-40
Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++SAWN  ++  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIAHV  L PG+F+H  GD H+Y+NHV  +  QL +  +P P L+       I  F  EDF +  YDPH  I+  ++V
Sbjct:  123 PNSRRLIVSAWNVGEIDHMALPPCHCLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTMMIAHVTGLEPGEFVHTFGDVHIYQNHVEQVNLQLTRDVRPLPKLRFARNVDSIFDFTFEDFIIEDYDPHPHIKGAVSV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_AZOVD (Thymidylate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=thyA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.985e-40
Identity = 74/142 (52.11%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +  M LPPCH   QFY+A+G LSCQ+YQRSAD+ LGVPFNIASYALL  M+A V  LAPG+F+   GD H+Y NH+   + QL + P P P ++++P+ KD+ +F  EDF+L+GY  H  I+  +A+
Sbjct:  123 PDSRRLIVSAWNPALIDEMKLPPCHALFQFYVADGRLSCQLYQRSADIFLGVPFNIASYALLILMMAQVTGLAPGEFVWTGGDCHLYANHLEQADLQLSREPLPLPTMQLDPDVKDLFAFRFEDFELVGYQSHPHIKAPVAI 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY2_BACSU (Thymidylate synthase 2 OS=Bacillus subtilis GN=thyA2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.985e-40
Identity = 75/142 (52.82%), Postives = 102/142 (71.83%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++SAWN  ++  MALPPCH   QFY+++G+LSCQ+YQRSAD+ LGVPFNIASYALLT +IAHV  L PG+FIH  GD H+Y+NH+  +  QL++  +P P L+   +   I +F  EDF +  YDPH  I+  ++V
Sbjct:  123 PNSRRLIVSAWNVGEIDKMALPPCHCLFQFYVSDGKLSCQLYQRSADVFLGVPFNIASYALLTMIIAHVTGLEPGEFIHTFGDVHIYQNHIEQVNLQLERDVRPLPQLRFARKVDSIFNFAFEDFIIEDYDPHPHIKGAVSV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_PEDPA (Thymidylate synthase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=thyA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.304e-39
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++SAWNP D+   ALPPCH   QFY+A+G+LSCQ+YQRS D+ LG+PFNIASYALLT +IA    L  G+FIH IGDAH+Y NH+  ++EQL++ P+P P LK       I  +   D  + GYDPH  I+  +AV
Sbjct:  175 PNSRRMIVSAWNPEDVPTSALPPCHSLFQFYVADGKLSCQLYQRSGDIFLGIPFNIASYALLTELIAKATGLEVGEFIHTIGDAHIYSNHLDQVKEQLERTPRPAPKLKFKQVHDSIFDYEPGDIVVEGYDPHPTIKAPVAV 316          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_PSYWF (Thymidylate synthase OS=Psychrobacter sp. (strain PRwf-1) GN=thyA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.224e-39
Identity = 76/142 (53.52%), Postives = 101/142 (71.13%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++S WNP++   +ALPPCH   QF++A+G+LSCQ+YQRSAD+ LGVPFNIASY+LLT MIA VCDL  G+FI   GD H+Y+NH+  + EQL +     P L +NPE KDI  F  +D ++ GY  H  I+  +AV
Sbjct:  145 PNSRRLIVSGWNPAEATQVALPPCHTLFQFFVADGKLSCQLYQRSADLFLGVPFNIASYSLLTHMIAQVCDLEVGEFIWTGGDCHLYQNHIDQVNEQLSREAYELPKLWLNPEIKDIFDFTFDDIRVEGYQSHPAIKAPVAV 286          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_LACPL (Thymidylate synthase OS=Lactobacillus plantarum GN=thyA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.224e-39
Identity = 75/143 (52.45%), Postives = 101/143 (70.63%), Query Frame = 3
Query:   15 YPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            +P+ RR+++SAWNP D+  MALPPCH   QFY+A+G+LSCQ+YQRS D+ LGVPFNIASYALLT +IA    LA G+F+H +GDAH+Y NHV  ++ QL + P+P P L ++     I  +   D KL GYDP   I+  +A+
Sbjct:  174 HPDSRRLIVSAWNPEDVPNMALPPCHTLFQFYVADGKLSCQLYQRSGDVFLGVPFNIASYALLTHLIAKETGLAVGEFVHTLGDAHIYTNHVEQVKTQLTRQPRPAPQLTLSGAHDSIFDYQMSDIKLSGYDPAPAIKAPVAI 316          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_AZOSE (Thymidylate synthase OS=Azoarcus sp. (strain EbN1) GN=thyA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.224e-39
Identity = 78/142 (54.93%), Postives = 98/142 (69.01%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR ++SAWNP ++  MALPPCH   QFY+A   LSCQ+YQRSAD+ LGVPFNIASYALLT M+A VC L  GDF+   GD H+Y NH+     QL + P+  P + +NP   DI  F  EDF+L GYDPH  I+ ++AV
Sbjct:  123 PDSRRHLVSAWNPGEVAGMALPPCHALFQFYVAGDRLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVCGLRAGDFVWTGGDCHLYLNHLDQARLQLSRQPRALPRMIVNPGVTDIFGFRFEDFRLEGYDPHPHIKAEVAV 264          
The following BLAST results are available for this feature:
BLAST of EY685266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TYSY_METPP4.482e-4054.36Thymidylate synthase OS=Methylibium petroleiphilum... [more]
TYSY_IIV64.482e-4052.63Probable thymidylate synthase 225R OS=Invertebrate... [more]
TYSY2_BACAM5.854e-4054.23Thymidylate synthase 2 OS=Bacillus amyloliquefacie... [more]
TYSY_BACA27.645e-4054.23Thymidylate synthase OS=Bacillus amyloliquefaciens... [more]
TYSY_AZOVD9.985e-4052.11Thymidylate synthase OS=Azotobacter vinelandii (st... [more]
TYSY2_BACSU9.985e-4052.82Thymidylate synthase 2 OS=Bacillus subtilis GN=thy... [more]
TYSY_PEDPA1.304e-3953.52Thymidylate synthase OS=Pediococcus pentosaceus (s... [more]
TYSY_PSYWF2.224e-3953.52Thymidylate synthase OS=Psychrobacter sp. (strain ... [more]
TYSY_LACPL2.224e-3952.45Thymidylate synthase OS=Lactobacillus plantarum GN... [more]
TYSY_AZOSE2.224e-3954.93Thymidylate synthase OS=Azoarcus sp. (strain EbN1)... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685266 ID=EY685266; Name=EY685266; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGGAATATCCAAATGATCGGCGGATTGTACTCTCGGCTTGG
AATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGC
TCAGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCT
CTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTC
TTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCGATTTCAT
TCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCAGGCCCCTGG
AGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAAGATCAAT
CCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCAAACTTAT
AGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTATAGATCT
CTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGGCAATAAT
TGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGCAGAGTTT
TATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTTAAATAGT
GCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGTGGTTCTA
AGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCACCTTTCCTTTTCCC
TTGTTTACTGAAAACTATCAAAGTATGTACTTCTGCTCAAAGTCTCAAAT
GCTCTTTTTGAAAAAGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGCCGCCCTAAAGGAACCAAGTTTCCTACCCCGT
GGCTTGGGAACCAAAAATTCTTTCAAAAAGGGGCCCTAAATTTCAATTCC
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