EY685266

Overview
NameEY685266
Unique NameEY685266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_OLICO (Thymidylate synthase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=thyA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.218e-45
Identity = 85/142 (59.86%), Postives = 106/142 (74.65%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR++++AWNP+D++ MALPPCH   QFY+ANG LSCQ+YQRSAD+ LGVPFNIASYALL  MIA V DLAPG F+H  GDAH+Y NH+     QL + P+  P L+INP  +DI  F  EDFKL  YDPH  I+ ++AV
Sbjct:  123 PDSRRLIVTAWNPADVEQMALPPCHCLFQFYVANGRLSCQLYQRSADVFLGVPFNIASYALLMMMIAQVTDLAPGHFVHTFGDAHLYSNHLDQARLQLTRAPRALPTLRINPAVRDIFGFRYEDFKLENYDPHPHIKAEVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_NEIMA (Thymidylate synthase OS=Neisseria meningitidis serogroup A GN=thyA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.590e-45
Identity = 83/142 (58.45%), Postives = 109/142 (76.76%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A VC L  G+F+H  GDAH+YRNH      QL++ P+  P++KINPE KD+ +F  EDF+L GYDPH  I+  ++V
Sbjct:  123 PDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLEAGEFVHTFGDAHLYRNHFEQAALQLEREPRALPVMKINPEVKDLFAFKFEDFELEGYDPHPHIKAAVSV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_NEIG1 (Thymidylate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=thyA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.077e-45
Identity = 83/142 (58.45%), Postives = 109/142 (76.76%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A VC L  G+F+H  GDAH+YRNH      QL++ P+  P++KINPE KD+ +F  EDF+L GYDPH  I+  ++V
Sbjct:  123 PDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLEAGEFVHTFGDAHLYRNHFEQAALQLEREPRALPVMKINPEVKDLFAFKFEDFELEGYDPHPHIKAVVSV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: DRTS_PLACH (Bifunctional dihydrofolate reductase-thymidylate synthase OS=Plasmodium chabaudi PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.077e-45
Identity = 85/141 (60.28%), Postives = 103/141 (73.05%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMA 440
            P  RRI+L AWN  DL  MALPPCH+  QFY+ +G+LSC MYQRS D+GLGVPFNIASY++ T MIA VC+L P +FIHV+G+AHVY NHV  L+ QL + P PFP LK+NPE K+I+ F   DF +  Y  H KI M MA
Sbjct:  442 PTCRRIILCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTYMIAQVCNLQPAEFIHVLGNAHVYNNHVESLKVQLNRTPYPFPTLKLNPEIKNIEDFTISDFTVQNYVHHDKISMDMA 582          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_RHOP2 (Thymidylate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=thyA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.713e-45
Identity = 84/142 (59.15%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR++++AWNP+D++ MALPPCH   QFY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PGDFIH +GDAH+Y NH+     QL + P+  P + INP   DI  F  EDF L GYDPH  I+ ++AV
Sbjct:  123 PDSRRLIVTAWNPADVEKMALPPCHCLFQFYVANGRLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVTGLKPGDFIHTLGDAHLYSNHLEQARLQLTRAPRALPAMAINPAVTDIFGFRYEDFTLHGYDPHPHIKAEVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_NITWN (Thymidylate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=thyA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.713e-45
Identity = 84/142 (59.15%), Postives = 107/142 (75.35%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+D+  MALPPCH   QFY+A G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PGDF+H +GDAH+Y NH+     QL +  +P P + INPE KDI +F  EDF+L  YDPH  I+ ++AV
Sbjct:  123 PDSRRLIVSAWNPADVDRMALPPCHCLFQFYVAGGKLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVTGLKPGDFVHSLGDAHLYSNHLDQARLQLSRPTRPLPTMTINPEVKDIFAFRYEDFRLENYDPHPHIKAEVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_NEIGO (Thymidylate synthase OS=Neisseria gonorrhoeae GN=thyA PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.713e-45
Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +  MALPPCH   QFY+A+G LSCQ+YQRSAD+ LGVPFNIASYALLT M+A VC L  G+F+H  GDAH+YRNH      QL++ P+  P++KINPE KD+ +F  EDF+L GYDPH  I+  ++V
Sbjct:  124 PDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGNLSCQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLEAGEFVHTFGDAHLYRNHFEQAALQLEREPRALPVMKINPEVKDLFAFKFEDFELEGYDPHPHIKAVVSV 265          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BRASO (Thymidylate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=thyA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.543e-45
Identity = 81/142 (57.04%), Postives = 107/142 (75.35%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR++++AWNP+D++ MALPPCH   QFY+ANG+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L  G+F+H  GD H+Y NH+     QL + P+P P + +NP+ KDI +F  EDF L GYDPH  I+ ++AV
Sbjct:  123 PDSRRLIVTAWNPADVEKMALPPCHCLFQFYVANGKLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVTGLKLGEFVHSFGDVHLYSNHIEQARLQLSRTPRPLPTMTLNPDVKDIFAFRYEDFALAGYDPHPHIKAEVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BACHK (Thymidylate synthase OS=Bacillus thuringiensis subsp. konkukian GN=thyA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.543e-45
Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP D+  MALPPCH   QFY+A+G+LSCQ+YQRS D+ LG+PFNIASY+LLT +IAH C L  G+F+H IGDAH+Y NH   +E+QL + P+PFP L +NP+ K +  F  ED  + GYDPH  I+  +AV
Sbjct:  177 PDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSGDIFLGIPFNIASYSLLTHLIAHECGLEVGEFVHTIGDAHIYTNHFEQVEKQLAREPRPFPKLTLNPDVKSVFDFEMEDLTIEGYDPHPAIKAPVAV 318          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BACCZ (Thymidylate synthase OS=Bacillus cereus (strain ZK / E33L) GN=thyA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.543e-45
Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP D+  MALPPCH   QFY+A+G+LSCQ+YQRS D+ LG+PFNIASY+LLT +IAH C L  G+F+H IGDAH+Y NH   +E+QL + P+PFP L +NP+ K +  F  ED  + GYDPH  I+  +AV
Sbjct:  177 PDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSGDIFLGIPFNIASYSLLTHLIAHECGLEVGEFVHTIGDAHIYTNHFEQVEKQLAREPRPFPKLTLNPDVKSVFDFEMEDLTIEGYDPHPAIKAPVAV 318          
The following BLAST results are available for this feature:
BLAST of EY685266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TYSY_OLICO1.218e-4559.86Thymidylate synthase OS=Oligotropha carboxidovoran... [more]
TYSY_NEIMA1.590e-4558.45Thymidylate synthase OS=Neisseria meningitidis ser... [more]
TYSY_NEIG12.077e-4558.45Thymidylate synthase OS=Neisseria gonorrhoeae (str... [more]
DRTS_PLACH2.077e-4560.28Bifunctional dihydrofolate reductase-thymidylate s... [more]
TYSY_RHOP22.713e-4559.15Thymidylate synthase OS=Rhodopseudomonas palustris... [more]
TYSY_NITWN2.713e-4559.15Thymidylate synthase OS=Nitrobacter winogradskyi (... [more]
TYSY_NEIGO2.713e-4558.45Thymidylate synthase OS=Neisseria gonorrhoeae GN=t... [more]
TYSY_BRASO3.543e-4557.04Thymidylate synthase OS=Bradyrhizobium sp. (strain... [more]
TYSY_BACHK3.543e-4556.34Thymidylate synthase OS=Bacillus thuringiensis sub... [more]
TYSY_BACCZ3.543e-4556.34Thymidylate synthase OS=Bacillus cereus (strain ZK... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685266 ID=EY685266; Name=EY685266; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGGAATATCCAAATGATCGGCGGATTGTACTCTCGGCTTGG
AATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGC
TCAGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCT
CTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTC
TTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCGATTTCAT
TCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCAGGCCCCTGG
AGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAAGATCAAT
CCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCAAACTTAT
AGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTATAGATCT
CTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGGCAATAAT
TGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGCAGAGTTT
TATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTTAAATAGT
GCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGTGGTTCTA
AGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCACCTTTCCTTTTCCC
TTGTTTACTGAAAACTATCAAAGTATGTACTTCTGCTCAAAGTCTCAAAT
GCTCTTTTTGAAAAAGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGCCGCCCTAAAGGAACCAAGTTTCCTACCCCGT
GGCTTGGGAACCAAAAATTCTTTCAAAAAGGGGCCCTAAATTTCAATTCC
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