EY685266

Overview
NameEY685266
Unique NameEY685266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9875 contig Csv1_Contig9875:1482..2381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_RHIL3 (Thymidylate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=thyA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.917e-44
Identity = 81/142 (57.04%), Postives = 106/142 (74.65%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR ++SAWNP+++  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNI+SYALLT M+A V  L PGDF+H +GDAH+Y NH    + QL + PKP P ++I P+ KDI  F  +DF+LIGY+    I+  +AV
Sbjct:  123 PNSRRHIVSAWNPAEVDEMALPPCHCLFQFYVADGKLSCQLYQRSADIFLGVPFNISSYALLTMMVAQVVGLKPGDFVHTLGDAHLYHNHFDQAKLQLARRPKPLPFMRIKPDVKDIFGFTFDDFELIGYEADASIKAPIAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BREBN (Thymidylate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=thyA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.917e-44
Identity = 81/142 (57.04%), Postives = 107/142 (75.35%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP++L  MALPPCH+  QFY+ANG+LSCQ+YQRS D  LGVPFNIASYALLT M+AHV  L  GDF+H IGDAH+Y NH+  ++ QL + PKP P L +NP+   I  F  ED +++GY+ H  I+ ++AV
Sbjct:  123 PDSRRLIVSAWNPAELDKMALPPCHLLFQFYVANGKLSCQLYQRSGDTFLGVPFNIASYALLTHMVAHVTGLEVGDFVHTIGDAHLYLNHIEQVKLQLTREPKPLPKLVLNPDVTSIFDFKYEDIEIVGYESHPHIKGEVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_ASCSU (Thymidylate synthase OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.917e-44
Identity = 87/142 (61.27%), Postives = 100/142 (70.42%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RRI+L+AWN  DL  MALPPCH  AQF + NGELSCQ+YQRS DMGLGVPFN+ASY LLT MIAHVC L  G   HV+GDAHVY NH+  L+EQL + P+PFP +        ID F AE   L GY+P   I+M MAV
Sbjct:  153 PNSRRIILNAWNVKDLHQMALPPCHTLAQFAVKNGELSCQLYQRSGDMGLGVPFNLASYGLLTHMIAHVCALKTGFLHHVLGDAHVYLNHIDALKEQLSRDPRPFPTVHFEGRIDSIDDFTAESIILNGYNPMAPIKMPMAV 294          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BARHE (Thymidylate synthase OS=Bartonella henselae GN=thyA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.116e-44
Identity = 81/142 (57.04%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +K MALPPCH F QFY+A+G+LSCQ+YQRSAD+ LG+PFNIASYALLT MIA V  L  GDFIH +GDAH+Y NH    + QL ++P   P ++INP   D+ SF  EDF+L+ YD    I+  +AV
Sbjct:  123 PDSRRLIVSAWNPASIKEMALPPCHCFFQFYVADGKLSCQLYQRSADIFLGIPFNIASYALLTMMIAQVSGLKVGDFIHTLGDAHLYSNHFEQAQHQLSRIPNALPFMRINPAVTDLFSFKFEDFELLNYDAQPHIKAPIAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BACHD (Thymidylate synthase OS=Bacillus halodurans GN=thyA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.116e-44
Identity = 77/142 (54.23%), Postives = 110/142 (77.46%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWN ++++ MAL PCH   QFY+ +G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA VCDL  G+F+H  GDAH+Y NH+  ++ QL + P+P P +++NPE + +  F  +DF+L+GYDPH  I+ +++V
Sbjct:  123 PDSRRLIVSAWNAAEIEDMALAPCHCLFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTKMIAQVCDLEEGEFVHTFGDAHIYLNHIEQVKLQLTREPRPLPEMRLNPEVRSLFDFTFDDFELVGYDPHPHIKGEVSV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BACFN (Thymidylate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=thyA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.116e-44
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RRI++SAWN  DL  M LPPCH F QFY+ANG LS Q+YQRSAD+ LGVPFNIASYALL  M+A V  L  GDFIH +GDAH+Y NH+  ++ QL + P+P P +KINP+ K+I  F  EDF+L+ YDPH  I  K+AV
Sbjct:  123 PDSRRIIVSAWNVGDLDHMNLPPCHAFFQFYVANGRLSLQLYQRSADIFLGVPFNIASYALLLQMMAQVTGLQAGDFIHTLGDAHIYLNHLEQVKLQLSREPRPLPQMKINPDVKNIFDFQFEDFELVNYDPHPHIAGKVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_NITHX (Thymidylate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=thyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.682e-44
Identity = 83/142 (58.45%), Postives = 106/142 (74.65%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+D+  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PGDF+H +GDAH+Y NH+     QL +  +  P + INPE K I +F  EDFKL  YDPH  I+ ++AV
Sbjct:  123 PDSRRLIVSAWNPADVDKMALPPCHCLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVTGLKPGDFVHSLGDAHLYLNHLDQARLQLTRPTRSLPTMTINPEVKSIFAFRYEDFKLENYDPHPHIKAEVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_AZOSB (Thymidylate synthase OS=Azoarcus sp. (strain BH72) GN=thyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.682e-44
Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR ++SAWNP ++  MALPPCH   QFY+A G LSCQ+YQRSAD+ LGVPFNIASYALLT M+A VCDL PGDF+   GD H+Y NH++  EEQLQ+ P P P + +NPE +D+ +F  EDF L GY  H  I+  +AV
Sbjct:  123 PDSRRHIVSAWNPGEVGSMALPPCHALFQFYVAGGRLSCQLYQRSADIFLGVPFNIASYALLTMMVAQVCDLEPGDFVWTGGDCHLYLNHLQQAEEQLQRTPYPLPRMILNPEVRDLFAFRFEDFTLEGYTAHPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_RHOPS (Thymidylate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=thyA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.727e-44
Identity = 82/142 (57.75%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR++++AWNP+D+  MALPPCH   QFY+A G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH+     QL + P+  P + I+P  KD+  F  EDF L GYDPH  I+ ++AV
Sbjct:  123 PDSRRLIVTAWNPADVDRMALPPCHCLFQFYVAGGKLSCQLYQRSADVFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHLYSNHLEQARLQLTRAPRALPEMVIDPAVKDVFGFRYEDFTLQGYDPHPHIKAEVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_LACCA (Thymidylate synthase OS=Lactobacillus casei GN=thyA PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.727e-44
Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = 3
Query:   15 YPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            +P  RR+++SAWNP D+  MALPPCH   QFY+ +G+LS Q+YQRSAD+ LGVPFNIASYALLT ++AH C L  G+FIH  GDAH+Y NH+  ++EQL + P+P P L++NP+K DI  F  +D KL+ YDP+  I+  +AV
Sbjct:  174 HPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316          
The following BLAST results are available for this feature:
BLAST of EY685266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TYSY_RHIL33.917e-4457.04Thymidylate synthase OS=Rhizobium leguminosarum bv... [more]
TYSY_BREBN3.917e-4457.04Thymidylate synthase OS=Brevibacillus brevis (stra... [more]
TYSY_ASCSU3.917e-4461.27Thymidylate synthase OS=Ascaris suum PE=2 SV=1[more]
TYSY_BARHE5.116e-4457.04Thymidylate synthase OS=Bartonella henselae GN=thy... [more]
TYSY_BACHD5.116e-4454.23Thymidylate synthase OS=Bacillus halodurans GN=thy... [more]
TYSY_BACFN5.116e-4459.86Thymidylate synthase OS=Bacteroides fragilis (stra... [more]
TYSY_NITHX6.682e-4458.45Thymidylate synthase OS=Nitrobacter hamburgensis (... [more]
TYSY_AZOSB6.682e-4458.45Thymidylate synthase OS=Azoarcus sp. (strain BH72)... [more]
TYSY_RHOPS8.727e-4457.75Thymidylate synthase OS=Rhodopseudomonas palustris... [more]
TYSY_LACCA8.727e-4455.94Thymidylate synthase OS=Lactobacillus casei GN=thy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685266 ID=EY685266; Name=EY685266; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGGAATATCCAAATGATCGGCGGATTGTACTCTCGGCTTGG
AATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGC
TCAGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCT
CTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTC
TTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCGATTTCAT
TCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCAGGCCCCTGG
AGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAAGATCAAT
CCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCAAACTTAT
AGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTATAGATCT
CTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGGCAATAAT
TGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGCAGAGTTT
TATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTTAAATAGT
GCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGTGGTTCTA
AGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCACCTTTCCTTTTCCC
TTGTTTACTGAAAACTATCAAAGTATGTACTTCTGCTCAAAGTCTCAAAT
GCTCTTTTTGAAAAAGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGCCGCCCTAAAGGAACCAAGTTTCCTACCCCGT
GGCTTGGGAACCAAAAATTCTTTCAAAAAGGGGCCCTAAATTTCAATTCC
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