EY685266

Overview
NameEY685266
Unique NameEY685266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_DEIDV (Thymidylate synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=thyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.657e-43
Identity = 78/142 (54.93%), Postives = 106/142 (74.65%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWN  +++ MALPPCH F QFY+A+G LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PG+FI   GD H+Y NH+    +QL + P+  P++++NP+ +++D F  EDF L GYDPH  I+  +AV
Sbjct:  123 PDSRRLIVSAWNVGEIEQMALPPCHAFFQFYVADGRLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVTGLKPGEFIWTGGDCHLYTNHLEQARKQLTREPRTLPVMRLNPDVRELDGFRFEDFTLEGYDPHPGIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_AGRVS (Thymidylate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=thyA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.388e-43
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR ++SAWNP+++  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L  GDFIH +GDAH+Y NH      QL + PKP P+++INP+ KD+  F  EDF L  Y     I+  +AV
Sbjct:  123 PNSRRHIVSAWNPAEVDEMALPPCHCLFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTMMVAQVTGLKAGDFIHTLGDAHLYANHFEQARLQLTRQPKPLPVMRINPDVKDVFGFAFEDFSLENYSADPVIKAPIAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_OCHA4 (Thymidylate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=thyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.649e-43
Identity = 82/142 (57.75%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            PN RR+++SAWNP+ +  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH      QL ++PK  P + INP+ KD+ +F  EDF+L GY+    I+  +AV
Sbjct:  123 PNSRRLIVSAWNPALVDEMALPPCHCLFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVAGLKPGEFIHTLGDAHIYANHFDQARLQLTRIPKKLPTMWINPDVKDLFAFRFEDFQLEGYEADPTIKAPIAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_CRYNE (Thymidylate synthase OS=Cryptococcus neoformans GN=TMP1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.649e-43
Identity = 90/153 (58.82%), Postives = 108/153 (70.59%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMA---------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK---DIDSFVAEDFKLIGYDPHQKIEMKMA 440
            P DRRI+LSAWNP DL LMALPPCHMF QF+++           +LSC MYQRS D+GLGVPFNIASYALLT MIA + D  P +FI  +GDAHVYR+HV PL+ QL++ P+ FP LK    K+   DID F  EDF + GY P  KI+MKM+
Sbjct:  164 PTDRRIILSAWNPKDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMS 316          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_PARL1 (Thymidylate synthase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=thyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.260e-42
Identity = 79/142 (55.63%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWN +D+  MALPPCH   QFY+A G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PG+FIH  GDAH+Y NH+   ++QL + PK  P++ INP+ K +  F  +DF L GY+ H  I   +AV
Sbjct:  123 PDSRRLIVSAWNVADVDSMALPPCHCLFQFYVAEGKLSCQLYQRSADIFLGVPFNIASYALLTMMVAQVTGLKPGEFIHTFGDAHLYLNHLEQADKQLAREPKKLPVMHINPDVKSLFDFTYDDFTLEGYEAHPHISAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_PSEAE (Thymidylate synthase OS=Pseudomonas aeruginosa GN=thyA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.149e-42
Identity = 80/142 (56.34%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PG+FI   GD H+Y NH+   + QL + P P P +K+NPE KD+  F  EDF+L+GY+ H  I+  +AV
Sbjct:  123 PDSRRLIVSAWNPALIDEMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVAGLQPGEFIWTGGDCHLYANHLEQADLQLTREPLPLPSMKLNPEVKDLFDFRFEDFELVGYEAHPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_PSEAB (Thymidylate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=thyA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.149e-42
Identity = 80/142 (56.34%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PG+FI   GD H+Y NH+   + QL + P P P +K+NPE KD+  F  EDF+L+GY+ H  I+  +AV
Sbjct:  123 PDSRRLIVSAWNPALIDEMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVAGLQPGEFIWTGGDCHLYANHLEQADLQLTREPLPLPSMKLNPEVKDLFDFRFEDFELVGYEAHPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_PSEA8 (Thymidylate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=thyA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.149e-42
Identity = 80/142 (56.34%), Postives = 105/142 (73.94%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++SAWNP+ +  MALPPCH   QFY+A+G+LSCQ+YQRSAD+ LGVPFNIASYALLT M+A V  L PG+FI   GD H+Y NH+   + QL + P P P +K+NPE KD+  F  EDF+L+GY+ H  I+  +AV
Sbjct:  123 PDSRRLIVSAWNPALIDEMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVAGLQPGEFIWTGGDCHLYANHLEQADLQLTREPLPLPSMKLNPEVKDLFDFRFEDFELVGYEAHPHIKAPVAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_BRUC2 (Thymidylate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=thyA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.149e-42
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P  R +++SAWNP+ +  MALPPCH   QFY+ANG LSCQ+YQRSAD+ LGVPFNIASYALLT MIA V  L PG+FIH +GDAH+Y NH      QL + PK  P++ INP+ KD+ +F  EDF+L GY+    I+  +AV
Sbjct:  123 PQSRSLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 264          
BLAST of EY685266 vs. ExPASy Swiss-Prot
Match: TYSY_CLOCE (Thymidylate synthase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=thyA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.807e-42
Identity = 77/142 (54.23%), Postives = 102/142 (71.83%), Query Frame = 3
Query:   18 PNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 443
            P+ RR+++S+WN  +++ MALPPCH F QFY+ NG LSC +YQRSAD+ +GVPFNIASYAL T MIA  C L  G+F+H +GDAH+Y NHV  ++ QL + P+P P + INP+ KD+  F   DF L  YDPH  I+  +AV
Sbjct:  123 PDSRRLIVSSWNVGEIEKMALPPCHCFYQFYVVNGTLSCMLYQRSADVFIGVPFNIASYALFTMMIAQSCGLRAGEFVHTLGDAHIYLNHVEQVKLQLSRDPRPLPKMNINPDIKDLFQFKYSDFTLTDYDPHPHIKGAVAV 264          
The following BLAST results are available for this feature:
BLAST of EY685266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TYSY_DEIDV5.657e-4354.93Thymidylate synthase OS=Deinococcus deserti (strai... [more]
TYSY_AGRVS7.388e-4357.04Thymidylate synthase OS=Agrobacterium vitis (strai... [more]
TYSY_OCHA49.649e-4357.75Thymidylate synthase OS=Ochrobactrum anthropi (str... [more]
TYSY_CRYNE9.649e-4358.82Thymidylate synthase OS=Cryptococcus neoformans GN... [more]
TYSY_PARL11.260e-4255.63Thymidylate synthase OS=Parvibaculum lavamentivora... [more]
TYSY_PSEAE2.149e-4256.34Thymidylate synthase OS=Pseudomonas aeruginosa GN=... [more]
TYSY_PSEAB2.149e-4256.34Thymidylate synthase OS=Pseudomonas aeruginosa (st... [more]
TYSY_PSEA82.149e-4256.34Thymidylate synthase OS=Pseudomonas aeruginosa (st... [more]
TYSY_BRUC22.149e-4257.04Thymidylate synthase OS=Brucella canis (strain ATC... [more]
TYSY_CLOCE2.807e-4254.23Thymidylate synthase OS=Clostridium cellulolyticum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685266 ID=EY685266; Name=EY685266; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGGAATATCCAAATGATCGGCGGATTGTACTCTCGGCTTGG
AATCCTTCTGATCTCAAATTGATGGCGCTTCCACCTTGCCACATGTTTGC
TCAGTTCTATATGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCT
CTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTC
TTGACATGCATGATTGCTCATGTTTGTGATCTTGCTCCTGGCGATTTCAT
TCATGTCATTGGTGATGCTCATGTTTATCGCAATCATGTCAGGCCCCTGG
AGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAATTTTGAAGATCAAT
CCTGAGAAGAAAGATATAGATTCTTTTGTAGCAGAGGATTTCAAACTTAT
AGGTTATGATCCACACCAGAAAATAGAAATGAAAATGGCGGTATAGATCT
CTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCTCCTAGGCAATAAT
TGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTATTGACGCAGAGTTT
TATACAAATAGCCAATAAGAATCTGATTGTTGGATAAACTTTTAAATAGT
GCCTATGTAGTAAGCGGGAATCCTTTAGTCCACAAGAGTCGGTGGTTCTA
AGGTGATTTAGGATGTTTGTATTTTCTTGCTTTTCACCTTTCCTTTTCCC
TTGTTTACTGAAAACTATCAAAGTATGTACTTCTGCTCAAAGTCTCAAAT
GCTCTTTTTGAAAAAGATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGCCGCCCTAAAGGAACCAAGTTTCCTACCCCGT
GGCTTGGGAACCAAAAATTCTTTCAAAAAGGGGCCCTAAATTTCAATTCC
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