EY685259

Overview
NameEY685259
Unique NameEY685259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685259 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.449e-17
Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 3
Query:   21 WQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDS---IHWVTFHSGYDFGYLLKLLTC-QNLPDTQVEFFNLIR-IYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSS 485
            W+ N  +FD ++    + SI  LK +G+N  K  E GI      EF      +L++    I WV F   YD  YL+K LT  + LP+T+ EF   ++ +    V+D+K + + C+ L    GL ++A++L+++RVG  H AGSDS LTA  F KL  +  +S
Sbjct:   83 WEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIG---IDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTFDLLNS 241          
BLAST of EY685259 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.392e-17
Identity = 57/154 (37.01%), Postives = 75/154 (48.70%), Query Frame = 3
Query:   21 WQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSIHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENF 476
            W+ NF +F V +D     SIE L+++G++  K  E GI    F   M         +I WVTFH  YD  YLLK  T + LP T   F   +     +VYD+K +   C  L    GL  LA    + RVG  H AGS++ LTA  F K+   F
Sbjct:   67 WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219          
BLAST of EY685259 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.392e-17
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 3
Query:   21 WQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDS---IHWVTFHSGYDFGYLLKLLTC-QNLPDTQVEFFNLI-RIYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSS 485
            W+ N  +F+ ++    + SI  LK +G+N  K  E GI      EF      +L +    I WV F   YD  YL+K LT  + LP+T+ EF   + ++    V+D+K + + C+ L    GL ++A++L+++RVG  H AGSDS LTA  F KL  +  +S
Sbjct:   78 WEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIG---IEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTFDLLNS 236          
The following BLAST results are available for this feature:
BLAST of EY685259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1C_ARATH1.449e-1735.80Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1H_ARATH9.392e-1737.01Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1D_ARATH9.392e-1735.19Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685259 ID=EY685259; Name=EY685259; organism=Citrus sinensis; type=EST; length=919bp
GGACAGATAAATATTGTGTTTGGCAATTTAATTTTCGGGAGTTCGATGTT
AATGAGGATATCTTTGCCAATGATTCGATCGAGCTTTTGAAACAAAGTGG
GATTAATTTTACAAAAAATAATGAGATAGGTATTGATGCAATGAGATTTG
GTGAGTTTATGATGTCATCTGGGATTGTTTTGAGTGATAGCATCCATTGG
GTGACATTTCATAGTGGGTATGATTTTGGGTATTTGCTAAAGCTTTTGAC
GTGCCAGAATCTGCCTGATACGCAAGTGGAGTTCTTTAATTTGATCAGAA
TTTATTTTCCGACCGTATATGATATCAAGCACTTGATGAAGTTTTGTAAT
AGCCTTCATGGAGGATTGAACAAACTTGCTGAGTTGTTGGAAGTTGAAAG
AGTTGGGATTTGTCATCAAGCAGGTTCAGATAGTTTGCTTACAGCTAGTA
CATTCCGAAAATTGAAAGAAAACTTCTTTAGCAGCTCTTTGGAAAAATAT
GCTGGTGTCTTATATGGTTTAGGCGTTGAAAATGGACAAAATATTCATTG
AAAAGAAGGGGGAAAAAAGGGAGTTTAGAAAGCTGTTTAATTTATTGTGT
GAATGTGGCCGGGGCCCTAGCCCCAAATTCATTGGATTACTTTTTGGGCA
ACTTAAATTTAATAAATTTCTCTTATACTTATTATCCCCAGGTTTTCAAC
AGAAAAAATTTGCATAGAACGCAGTCACAATACTTTTTTCCTGGTTTACA
AAAATAAATAACAAGGGCGGCCGCTTTCACAGGAACCAATAATTCCGGTC
CCCGCTGCTGCGCACACACAACGTTCTCATACCTGGCCCCACCAATTCAA
TACCCCTGCCCACGCGTTCCAACCGNGTGCATCGGGAGACAAGACCGGCC
GGAGCAGAACTGGCCGCGG
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