EY685257

Overview
NameEY685257
Unique NameEY685257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685257 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 39/114 (34.21%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  490 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGKCFHG---SLFHWGPHTANLSIGIPQSSFEQNPLGF-----AHFP 807
            +P   GE  + C  +  +P VSF +GG  F+L  ++YV++        C+SGF A DV PP GP WILG  F G   ++F  G   ++  +G+ ++      LG+     A FP
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARARTRGADLGWGETAQAQFP 419          
BLAST of EY685257 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.909e-11
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  502 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVL-EVGEGVAAQCISGFTAFDVAPPRGPLWILGKCF---HGSLFHWGPHTANLSIGIP 762
            +GE AVDC  L+ MPNV+F I G  + L+P  Y+L ++ +G+   C SGF   D+ PP GPLWILG  F     S+F  G +   L+  +P
Sbjct:  309 DGEYAVDCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQF-CGSGFQGLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVGLAPAVP 398          
BLAST of EY685257 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  502 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEY-VLEVGEGVAAQCISGFTAFDVAPPRGPLWILGKCF---HGSLFHWGPHTANLSIGIP 762
            +GE AV+C NL+ MP+V+FTI G  + L+P  Y +L+  +G+   C SGF   D+ PP GPLWILG  F     S+F  G +   L+  +P
Sbjct:  312 DGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQF-CSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVP 401          
The following BLAST results are available for this feature:
BLAST of EY685257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
NAPSA_HUMAN8.568e-1234.21Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_RAT1.909e-1142.86Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
CATE_HUMAN2.493e-1142.86Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-G01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685257 ID=EY685257; Name=EY685257; organism=Citrus sinensis; type=EST; length=882bp
AAATTTGTCATCTCAGTTTGTAGCTACATTATCTGCTGTTTGGTCATAGC
CCTGCCTCACTTTTATTTTGCTATCAGATTCATATGAATTGCATTTATTT
GTAATTGATACTGCTCTGTGGCAATTTCACTTTTCCAGACCATAATTACA
CAAATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAA
GACTCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTG
AGACACAACCACAAAAGATCTGCTCACAGATGGGTCTATGTACTTTTGAT
GGGACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTC
AGACAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTG
AGATGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCA
GATCAAATCTTGAATTATGTGAATCAGCTTTGTGACCGTCTGCCCAGTCC
AAATGGAGAATCAGCTGTTGATTGTGACAATTTATCTTCCATGCCCAATG
TTTCATTTACAATTGGTGGCAAAGTATTTGACCTTGCACCAAATGAGTAT
GTTCTTGAAGTGGGAGAGGGAGTTGCAGCCCAATGCATCAGTGGATTTAC
TGCTTTCGATGTGGCCCCTCCGCGTGGTCCTCTGTGGATTCTGGGAAAAT
GTTTTCATGGGTCGCTATTCCACTGGGGTCCACATACGGCAAATTTGTCT
ATTGGAATTCCCCAAAGCAGCTTTGAACAAAATCCCCTGGGCTTCGCCCA
TTTTCCAAAATTAGCTTGTTGGAAAAATTAATATACCCAGCCATACACAA
CATAATATATGGGGAAAAATGGGGGGGGGGTG
back to top