EY685238

Overview
NameEY685238
Unique NameEY685238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19
Identity = 57/160 (35.62%), Postives = 83/160 (51.88%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPI---RRYPRKSDATFPLRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTADGP---SGCHPPP------ASPSGSGVLSQQQVAAMLWVQRTYLIYGYWYDPNRDHTEI-PEC 441
            RE +F  WF+PT  FH+Y + W+PSE+++FVD  PI   R Y  +  A    + M ++ S+W+A  WAT+ GR K ++   PFV + R +K   C   G      C  P        SPS S  L+  Q+  M  ++  ++IY Y  D NR    + PEC
Sbjct:  129 REQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLWKGSVSIKQCVDPTIRSNWWTSPSFS-QLTASQLTKMQKIRDGFMIYDYCKDTNRFKGVMPPEC 287          
BLAST of EY685238 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.551e-18
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 1
Query:    1 RELRFHLWFDPTQDFHHYAVLWSPSELIFFVDDVPIRRYPRKSDATFP-LRPMYLYGSIWDASSWATEEGRYKADYKYQPFVGQYRNFKIAGCTAD--GPSGCHPPPASPSGSGVLSQQQVAAMLWVQRTYLIYGYWYDPNRDHTEIPE 438
            ++ RF LWFDPT+D+H Y+ LW+P++L+F+VDD PIR Y +  D  +P ++ M+L GS+ + S           D K  P++ +++  KI GC  +  G   C  P    +    LS ++    L  ++TYL Y Y  D  R + ++P+
Sbjct:  124 KDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSVQNGSI---------IDPKQMPYIAKFQASKIEGCKTEFMGIDKCTDPKFWWNRK-QLSSKEKTLYLNARKTYLDYDYCSDRQR-YPKVPQ 261          
The following BLAST results are available for this feature:
BLAST of EY685238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH26_ARATH6.830e-1935.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH7.551e-1834.23Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-E01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685238 ID=EY685238; Name=EY685238; organism=Citrus sinensis; type=EST; length=854bp
AGAGAATTGAGGTTTCATCTCTGGTTTGATCCAACTCAAGACTTTCATCA
CTATGCTGTGCTATGGTCCCCAAGTGAGCTCATATTCTTCGTGGATGATG
TGCCAATTAGAAGGTATCCAAGAAAGAGCGATGCCACATTTCCCTTAAGA
CCAATGTATCTGTACGGTTCAATATGGGATGCATCATCATGGGCCACCGA
GGAGGGCAGATACAAAGCCGACTATAAGTACCAACCTTTTGTTGGTCAGT
ACAGAAATTTCAAAATAGCAGGTTGCACCGCGGACGGGCCATCCGGGTGC
CACCCACCCCCGGCCTCGCCGTCCGGGTCCGGCGTCCTGAGCCAGCAGCA
AGTTGCCGCAATGCTATGGGTTCAGAGGACCTACCTGATTTATGGCTATT
GGTATGATCCCAATAGAGACCATACCGAAATACCCGAGTGCTAATAATTA
GGGGTAAGGGTACATGGTCCCATTGACGCCTTGATCTGGGGTGCAACGGC
TCGCCGTTTCCGAGCACTAGACGCGGCAATCCACGGGGAAAGCGGGGGGC
GAACCCGGGCACGCAGGGAGGCGCAGGGGCCAGAGGACATCGCGCGCTGC
GGCTCGTGACCGGAGCCACCTCGCAAATAGCATAGTCGGAAGGAGGAGAA
GACCGAATGAACGTGAAACGCGCACAATCACGTCAGCACAACGACCATAG
ACAGCTCCCGGCACCCGCCAGACACGACATCTCCACCAGATGACCGAGAC
ACCTGCGCTCGGCCGACAACGCTGCGCCCGCCGCACGCCCGCGGCATCTC
CTACACCACGTCGAGTCTAAGACGGCCACGCGCACACGGCACGCGTGCCG
GCCC
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