EY685218

Overview
NameEY685218
Unique NameEY685218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685218_ssr735 microsatellite EY685218_ssr735:735..744. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.707e-26
Identity = 61/165 (36.97%), Postives = 93/165 (56.36%), Query Frame = 3
Query:  117 VTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLP 611
            +  Y L PGG  I VT +N+ + V L  +  L  +I  Q  AF  GF  +     + +   +E+E+L+ G PD+D+  ++ +T+Y GY+     I++FW+VV GF  + + +LL F TG+ +VP+ G + L        F+I K   S + LP AHTCFNQL LP
Sbjct:  594 IKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL-------NFKISKNETSTNCLPVAHTCFNQLCLP 751          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.137e-25
Identity = 70/204 (34.31%), Postives = 108/204 (52.94%), Query Frame = 3
Query:    6 LLQNLKWML--ENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLP 611
            L   LK +L  E ++ +    TF +  +E  +I         Y L PGG  I VT +N+ + V L  +  L  +I  Q  AF  GF  +     + +   +E+E+L+ G P++D+  ++ +T+Y GY+     I++FW+VV GF  E + +LL F TG+ +VP+ G + L        F+I K   S + LP AHTCFNQL LP
Sbjct:  560 LAHGLKELLSYEGNVEEDFYSTFQVFQEEFGVI-------KSYNLKPGGDKIPVTNQNRREYVQLYTDFLLNKSIYKQFAAFYCGFHSVCASNALMLLRPEEVEILVCGSPELDMHALQRSTQYDGYAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADL-------NFKISKNETSTNWLPVAHTCFNQLCLP 749          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: UBE3B_XENTR (Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.485e-25
Identity = 81/218 (37.16%), Postives = 116/218 (53.21%), Query Frame = 3
Query:   33 ENDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPGIS 620
            + DISD L LT S D D          Q+  +EL+PGG++I VT ENK   + L+A  R+ T I+ Q  AF+ GF  +I  E I +F+  EL+ LISG   +IDLDD++ +T  Y G+  +  VI W W+++   FS E+KA  L+FVT  S+ PL GF+      +++ +  S         GS+               LP++ TCFN L LP  S
Sbjct:  841 DGDISD-LGLTLSYDEDV-------MGQLVCHELVPGGKSIPVTNENKISYIHLMAHFRMHTQIKNQTVAFISGFRSIIRPEWIRMFSAPELQRLISGDNAEIDLDDLKKHTVYYGGFHGSHRVIIWLWDILANDFSSEEKAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKKEPGGRLPTSSTCFNLLKLPNYS 1050          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.940e-25
Identity = 65/163 (39.88%), Postives = 95/163 (58.28%), Query Frame = 3
Query:  129 ELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLP-DIDLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLP 611
            +LIP G NI VT EN+ Q + LV+ + L   +  Q  AF  GFT++I    +++F++ E+++L+ G P  ID+DD+R +T Y+ GY   SP I  FWEV++ F +EDK   ++FVT  ++ P+ GF AL        F I         LP+A TC N L LP
Sbjct:  847 DLIPNGSNISVTNENRLQYIHLVSNYYLNARLSRQCRAFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALM-----PSFCIRVNGEDETRLPTASTCVNLLKLP 1004          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.940e-25
Identity = 80/205 (39.02%), Postives = 106/205 (51.71%), Query Frame = 3
Query:    6 LLQNLKWMLENDISDV--LDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPD-IDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLP 611
            L  NL  +L     ++  LDLTF ID  E        A+V D  LIP G    VT++N    V  V +++L       ++AF  G + +I    + +FN  EL++LISG  D IDLDD+++NTEY GY      I  FWEV+  F  E+K   L+FVT   + PL+GF AL       KF I  A      LP+A TC N L LP
Sbjct:  694 LYNNLIKLLNMTTDEIKSLDLTFEIDEPESS------AKVVD--LIPNGSKTYVTKDNVLLYVTKVTDYKLNKRCFKPVSAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEYGGYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKAL-----DPKFGIRNAGTEKYRLPTASTCVNLLKLP 885          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 6.240e-24
Identity = 72/213 (33.80%), Postives = 114/213 (53.52%), Query Frame = 3
Query:   48 DVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPGIS 620
            D+ DL  ++  DE+ +      Q+  +EL+PGG+ I VT+ENK   + L+A  R+ T I+ Q  A + GF  +I  E I +F+  EL+ LISG   +IDL+D++ +T  Y G+  +  VI W W+++   F+ E++A  L+FVT  S+ PL GF+      +++ +  S         GS+               LP++ TCFN L LP  S
Sbjct:  841 DIADLGLTLSYDEDVM-----GQLVCHELVPGGKTIPVTDENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYS 1048          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.816e-23
Identity = 72/213 (33.80%), Postives = 113/213 (53.05%), Query Frame = 3
Query:   48 DVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG-LPDIDLDDMRANT-EYSGYSAASPVIQWFWEVV-QGFSKEDKARLLQFVTGTSKVPLEGFS------ALQGISGSQKFQIHKAYGSI-------------DHLPSAHTCFNQLDLPGIS 620
            D+ DL  ++  DE+ +      Q+  +ELIPGG+ I VT ENK   + L+A  R+ T I+ Q  A + GF  +I  E I +F+  EL+ LISG   +IDL+D++ +T  Y G+  +  VI W W+++   F+ +++A  L+FVT  S+ PL GF+      +++ +  S         GS+               LP++ TCFN L LP  S
Sbjct:  839 DITDLGLTLSYDEDVM-----GQLVCHELIPGGKTIPVTNENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGGRLPTSSTCFNLLKLPNYS 1046          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.097e-23
Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   15 NLKWMLE---NDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPD--IDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDL 608
            N+  MLE    D  D+  LTF     +     ++ +++   +L P G    VT ENKH+   L  +  L  +I P   +F  GF  +I G    +F  +ELE L+ G  +  +D+  +R+ T Y  G+   SPV+QWFWE++       + +LL FVTG+ +VP  G + +        F+I +     D LP +HTCFN++ L
Sbjct:  621 NMLKMLEYDGEDFEDIFALTFETCFPDR----FDESKIHYRQLCPDGSTQAVTRENKHEYFRLWMDFYLNRSIAPGFESFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTI-------PFRISRIRSGADRLPLSHTCFNEICL 813          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 9.010e-23
Identity = 68/200 (34.00%), Postives = 103/200 (51.50%), Query Frame = 3
Query:   33 ENDISDVLDLTFSIDADEEKLILYERAQVTDY---ELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPG-ELISIFNDKELELLISGLPD---IDLDDMRANTEY-SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDL 608
            E++  DV  LTF         IL +     +Y   EL   GRN+ +T+ NKH+ V    E  L  +I PQ N F+ GF  +      I +FN +ELE L+ G  +    D   +R+ T+Y  G+S  S  + WFWE+++ +    + +LLQFVT + ++P  G S +       K  +  ++ S D LP AHTCFN++ L
Sbjct:  673 EDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPITQSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTI-----PFKISLLGSHDS-DDLPLAHTCFNEICL 866          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 1.537e-22
Identity = 73/210 (34.76%), Postives = 110/210 (52.38%), Query Frame = 3
Query:    6 LLQNLKWMLE--NDISDVLDLTFSIDADEEKLILYERAQVTDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGE--LISIFNDKELELLISGLPDIDLDDMRANTEYSG-YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGIS 620
            L Q+LK +LE   ++ D + +TF I   +    L+    +  Y+L   G  I +T EN+ + V+L +++ L  ++  Q  AF  GF  ++  E  L  +F  +E+ELLI G  ++D   +   TEY G Y+  S +I+ FWE+V  F+ E K   LQF TGT + P+ G        G  K  I K     + LP++HTCFN L LP  S
Sbjct:  658 LYQSLKDLLEYEGNVEDDMMITFQISQTD----LFGNPMM--YDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGF-HMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL-------GKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYS 853          
The following BLAST results are available for this feature:
BLAST of EY685218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HECD2_HUMAN8.707e-2636.97Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
HECD2_MOUSE1.137e-2534.31Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
UBE3B_XENTR1.485e-2537.16Ubiquitin-protein ligase E3B OS=Xenopus tropicalis... [more]
YFK7_SCHPO1.940e-2539.88Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]
HUL5_YEAST1.940e-2539.02Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
UBE3B_MOUSE6.240e-2433.80Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
UBE3B_HUMAN1.816e-2333.80Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]
HUL4_ASHGO3.097e-2332.35Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
HUL4_YEAST9.010e-2334.00Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
UBE3A_HUMAN1.537e-2234.76Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-C03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685218 ID=EY685218; Name=EY685218; organism=Citrus sinensis; type=EST; length=938bp
CCGGATTACTTCAAAACCTGAAGTGGATGCTTGAGAATGACATCAGTGAT
GTTCTTGACCTCACTTTTAGTATTGATGCTGATGAGGAGAAGCTGATTTT
GTATGAAAGGGCGCAGGTAACCGACTATGAGCTAATTCCTGGTGGACGGA
ATATTAAAGTTACTGAGGAGAATAAGCACCAGGATGTGGATTTAGTCGCG
GAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGCTTTTCTGGA
GGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCTTCAATGACA
AGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGATTTGGATGAC
ATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATCTCCTGTTAT
CCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGGATAAGGCTC
GTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTGGAAGGTTTC
AGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAATACACAAGGC
ATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTTTCAATCAAT
TAGATTTGCCGGGAATATCCTTCTAAGCAGCATCTAAGAGGAGAAGACTG
CTGCTTGCAATTCATGAAGGAATGAAGGGGTTTGGGATTTGGTTACATAA
ATTTGGGTATTTCTCCAGAATAGTGTAAAATAAAATATATATATTATCCC
AAAAGCTTGCATTGGGAAGAGGAAATGGGTAAAAAGGGGGGATTCCCATT
TCTAATTCAAAAATTGTTTTTTTTATTGGCAGCCATAATTTTGGGCTATT
GGAAAATTAACATGGGGAGGTTTGAAATTTTGCCACATGGGCCCCTTATT
TTTTTCGAAAATCTCCTTTTTCCCCTTTTTTGGTTTTC
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