EY685215

Overview
NameEY685215
Unique NameEY685215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.021e-19
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  227 GRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            G+ + L LD++SG GF S +++L+G+  +++KLVPG+SAGTVT FY+ S      DE+D    G  +G
Sbjct:   49 GKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS-PGTTWDEIDFEFLGNLSG 115          

HSP 2 Score: 55.0694 bits (131), Expect = 2.021e-19
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPI 539
            LGN +G PYT  TN+Y  G GD+EQ+ +LWFDP  ++  Y I
Sbjct:  110 LGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCI 151          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.629e-19
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  194 WADAHLRQIEG-GRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            W D   + ++  G  + L LD+ SG GF S +++L+G+V +++KLVPG+SAGTVT FY+ S      DE+D    G  +G
Sbjct:   37 WGDGRGKILDNVGNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKS-PGTTWDEIDFEFLGNISG 115          

HSP 2 Score: 54.299 bits (129), Expect = 2.629e-19
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGN +G PYT  TN+Y  G GD+EQ+ +LWFDP   +  Y I+
Sbjct:  110 LGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCII 152          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.629e-19
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  185 GGGWADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            G G    H R    G+ + L LD++SG GF S +++L+G+  +++KLVPG+SAGTVT FY+ S      DE+D    G  +G
Sbjct:   38 GDGRGKIHDRD---GKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS-PGTTWDEIDFEFLGNISG 115          

HSP 2 Score: 54.299 bits (129), Expect = 2.629e-19
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPI 539
            LGN +G PYT  TN+Y  G GD+EQ+ +LWFDP  ++  Y I
Sbjct:  110 LGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCI 151          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 7.981e-18
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDVGGPGKPNG 430
            W   ++ ++  G+ +QL LD +SG GF SK  Y  G   ++IK+ P D++G VTAFY+ S   N  DE+D    G   G
Sbjct:   47 WGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSK-GNTHDEVDFEFLGNKEG 124          

HSP 2 Score: 50.447 bits (119), Expect = 7.981e-18
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGDREQRVNLWFDPAGHYPLYPIL 542
            LGN+ G+    QTN++ NGKG+REQ++ LWFDP+  +  Y IL
Sbjct:  119 LGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAIL 160          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 5.908e-14
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRDELD 403
            + D +L   + G++++L LD+ +G GF S   YL G  S  IKL    +AG V AFYM++    E   DE+D
Sbjct:   39 FGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEID 110          

HSP 2 Score: 47.3654 bits (111), Expect = 5.908e-14
Identity = 24/50 (48.00%), Postives = 28/50 (56.00%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGK--GDREQRVNLWFDPAGHYPLYPILLEHSH 557
            LGN   + +  QTNIY NG     RE+R NLWFDP   +  Y IL   SH
Sbjct:  114 LGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSH 163          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.970e-14
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 2
Query:  194 WADAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRDELD 403
            + D +L     G++++L LD+ +G GF S   YL G  S  IKL    SAG V AFY+++    E   DE+D
Sbjct:   39 FGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEID 110          

HSP 2 Score: 48.521 bits (114), Expect = 9.970e-14
Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANGKGD--REQRVNLWFDPAGHYPLYPILLEHSH 557
            LGN  G+ +  QTNIY NG     RE+R NLWFDP   +  Y IL   SH
Sbjct:  114 LGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSH 163          
BLAST of EY685215 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 1.433e-11
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  203 AHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENV---RDELDV 406
            AH  Q+ G  A +L LD++SG G  SK +Y +G  S ++KL  G ++G V AFY+ SN E      DE+D+
Sbjct:   53 AHNIQVNGSLA-KLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYL-SNAETYPKSHDEIDI 121          

HSP 2 Score: 39.2762 bits (90), Expect = 1.433e-11
Identity = 19/54 (35.19%), Postives = 27/54 (50.00%), Query Frame = 3
Query:  414 LGNRTGQPYTAQTNIYANG--KGDREQRVNLWFDPAGHYPLYPILLEHSHNCLL 569
            LG      +T QTN+YANG  +  RE++   WFDP   +  Y ++    H   L
Sbjct:  124 LGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFL 177          
The following BLAST results are available for this feature:
BLAST of EY685215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
XTH18_ARATH2.021e-1944.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH2.629e-1941.25Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH17_ARATH2.629e-1941.46Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_ARATH7.981e-1839.24Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH5.908e-1438.89Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH9.970e-1438.89Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH1.433e-1142.25Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-B12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685215 ID=EY685215; Name=EY685215; organism=Citrus sinensis; type=EST; length=916bp
CACGCGTCCGCCACAACATATAATTAAAGCCCTTTAAAACCCCCCAACAG
ATAATATTTTATTGTACGGCCCCTTAAAGAGCCCTGCCTATCCTAAGAAA
TGCAATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCCTGCG
TTTTAGGGCGACCGGCTACTTTTCTTGAGGATGTGGGGGGGGGTGGGCCG
ATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTA
GACCAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGG
GCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTG
TCACTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTT
GATGTGGGGGGGCCTGGGAAACCGAACGGGTCAGCCTTACACGGCCCAGA
CCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTC
TGGTTTGACCCTGCTGGCCATTATCCGCTTTACCCTATTCTCCTGGAACA
TTCACATAATTGCCTTCTATGTGGATGATGGGGCCCATTAGGATTTACCA
AAAACCGTGGCAAGGGCTCCCATTTCAATGAACCCACCCCAACAAGCGCG
TTTCAAGCGCTGACGCCAGGAGGATCACTAGGGCGAGCCGCGGGAGCATC
CGCGCAACTGCCCGCGAACCGCAGGCCTCTTCTACGCTTGCTTAGGCCAC
ACCGTGATACCGCGAGGGGCCCCACACGGCCCCCCGGGCCACCACGGGAC
CCGGCCGCCCCCACACGCGCCGGGCACACAGCGGCGGCGGGGCAACAGCC
CAGTCAGACGCCCACACCCACAACCCCCACAAAGGCCCACCCCCCGCACC
GCCCCCTCGCCGCCAC
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