EY685214

Overview
NameEY685214
Unique NameEY685214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2111 contig Csv1_Contig2111:477..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.488e-18
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICS+LTDPNPD+PLVPEIAH+YKTDR +YE TAR WT+KYA+
Sbjct:   99 ISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLLTD NPDDPLVPEIAH+YKTDR KYE TAR WT+KYA+
Sbjct:  100 LSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.306e-17
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICS+LTDPNPDDPLVPEIAH+YKT R +YE+TAR WT+KYA+
Sbjct:   99 ISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17
Identity = 41/49 (83.67%), Postives = 41/49 (83.67%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            VSKVLLSICSLL DPNPDDPLVPEIAH YK DR KY   AR WTQKYAM
Sbjct:   99 VSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.227e-17
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLLTD NPDDPLVPEIAH+YK DR KYE TA+ WT+KYA+
Sbjct:   99 ISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.909e-17
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:   99 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.909e-17
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:   99 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.909e-17
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:   99 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.909e-17
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:   99 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.909e-17
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 3
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:   99 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of EY685214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
UBC1_COLGL4.488e-1879.59Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC4_YEAST5.862e-1883.67Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC1_MAGGR1.306e-1779.59Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D4_HUMAN1.705e-1783.67Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC4_CANAL2.227e-1779.59Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2D2_XENLA2.909e-1781.63Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT2.909e-1781.63Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE2.909e-1781.63Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN2.909e-1781.63Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN2.909e-1781.63Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-B11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685214 ID=EY685214; Name=EY685214; organism=Citrus sinensis; type=EST; length=451bp
CGGACGCGTGGGTTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACG
GATCCAAATCCCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAA
GACCGACAGGAACAAGTACGAGACAACTGCAAGGAGCTGGACCCAGAAGT
ATGCCATGGGCTAAACCTGGGTTATGGTGTGTGAGGGGGTTCCTTTTCTT
TTTAATTCTGGTTTCGAGTTAATGTATGAATATTCTGTCTGTTCAATCCT
AAAAAGTGGACCATAAGAAAGGTCCACTACATCCCCCGAATTGGAAAGGA
GAAACGGGTTGCTTCTTAATTGTTGTATGGATAATGTCACTTTGGTCAAT
CAAATGTGTTCTGATAATGTCACTTGGTCAGCCAAATTTGTACGTCCATT
CTGAATGATAAAAATCTTTCTTTCTAGTTGCTCTTGAAAAAAAAAAAAAA
A
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