EY710388

Overview
NameEY710388
Unique NameEY710388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710388 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.293e-19
Identity = 58/143 (40.56%), Postives = 68/143 (47.55%), Query Frame = 3
Query:  126 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPGTIMVTATXXXXXXXXXXXXXXGWCNPPQQQF*SLSACVPITLLNNRAGVVPVTLQKGTPGGKKGGIRFTING 548
            GW+   ATFY              YGNLY QGYG N AALST LFNNG SCG CY I C  D  P  C  GT  +T T              GWCN  +  F  +S      +    AG+VP+  Q+     + GG+RFTI G
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGT-AITVTGTNFCPPNYDLPYGGWCNTTRPHF-DMSQPAWENIGIYSAGIVPILYQQ-VKCWRSGGVRFTITG 161          
BLAST of EY710388 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 2.627e-18
Identity = 55/142 (38.73%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATXXXXXXXXXXXXXXGWCNPPQQQF*SLSACVPITLLNNRAGVVPVTLQKGTPGGKKGGIRFTINGH 551
            W +ARA +Y               YG+L   GYG  TAALSTALFN+G SCG+CYEI C  +P+ CL G+I +TAT               WC  P + F  LS  + I +   +A +VPV  ++  P  K GG++F + G+
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITAT-------DLCPPGSAWCYLPNKHF-DLSLPMFIKIAQVKAKMVPVRYRR-VPCAKTGGVKFEVKGN 177          
BLAST of EY710388 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.627e-18
Identity = 58/143 (40.56%), Postives = 69/143 (48.25%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGTIMVTATXXXXXXXXXXXXXXGWCNPPQQQF-*SLSACVPITLLNNRAGVVPVTLQKGTPGGKKGGIRFTING 548
            W+   ATFY              YGNLY QGYG N AALST LFN+G SCG CY I C     P WC  G   +T T              GWCN  +  F  S  A   I + N  AG++P+  Q+     + GG+RFTING
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGK-AITVTGTNYCPPNYDLPYGGWCNATRPHFDMSQPAWENIGIYN--AGIIPILYQQ-VKCWRYGGVRFTING 161          
BLAST of EY710388 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.693e-18
Identity = 47/119 (39.50%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  198 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATXXXXXXXXXXXXXXGWCNPPQQQF*SLSACVPITLLNNRAGVVPVTLQKGTPGGKKGGIRFTING 548
            YG+L    YG  TA +S ALF  G +CG CYE++CVN   WCL G  T++VTAT              GWCN P++ F  +S    + +   +A +VPV  ++     + GG+RFTI G
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHF-EMSEAAFLRVAKAKADIVPVQFRR-VSCDRAGGMRFTITG 173          

HSP 2 Score: 26.9498 bits (58), Expect = 3.693e-18
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  613 ADFKSKGTKTGWGNQGQKNWGAKTWQ 690
            A  K KG++TGW   G +NWG + WQ
Sbjct:  192 AAVKVKGSRTGWIPMG-RNWG-QNWQ 215          
BLAST of EY710388 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 54/144 (37.50%), Postives = 70/144 (48.61%), Query Frame = 3
Query:  126 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATXXXXXXXXXXXXXXGWCNPPQQQF*SLSACVPITLLNNRAGVVPVTLQKGTPGGKKGGIRFTING 548
            GWI A AT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C    DPKWCL G  + VTAT              GWCN P+  F   S            G+VPV  ++     ++GG+RFT+ G
Sbjct:   26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTAT-----NFCPTNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRR-VGCKRRGGVRFTMRG 163          
BLAST of EY710388 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.220e-15
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  222 YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATXXXXXXXXXXXXXXGWCNPPQQQF*SLSACVPITLLNNRAGVVPVTLQKGTPGGKKGGIRFTINGH 551
            Y T TAALST LF +G  CG CYE++CV  P WC PG  ++++T T              GWCNPP+  F  ++    + L    AG+VPV  ++  P  + GG+RF + G+
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHF-DMAPPSFLKLAQRVAGIVPVQYRR-VPCQRTGGVRFCLQGN 193          
BLAST of EY710388 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.594e-15
Identity = 56/143 (39.16%), Postives = 66/143 (46.15%), Query Frame = 3
Query:  129 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATXXXXXXXXXXXXXXGWCNPPQQQF*SLSACVPITLLNNRAGVVPVTLQKGTPGGKKGGIRFTING 548
            W+   ATFY              YGNLY Q YG N AALST LFN+G SCG CY I C     P WC  G  I VT T              GWCN  +  F  +S      +    AG+VP+  Q+     + GG+RF ING
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGT-----------NYGGWCNATRPYF-DMSQPAWENIGIYSAGIVPILYQQ-VKCWRYGGVRFIING 152          
BLAST of EY710388 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.550e-15
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 3
Query:  198 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATXXXXXXXXXXXXXXGWCNPPQQQF*SLSACVPITLLNNRAGVVPVTLQKGTPGGKKGGIRFTING--HF 554
            YG+L    +   +A LS  LFN G SCG+C E++CVN  +WCL G  +++VTAT              GWCN P++    LS      +   RA ++P+  ++    G++GG+RF+++G  HF
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHL-ELSHAAFTGIAETRAEMIPIQYRR-VKCGRRGGLRFSLSGSSHF 173          
The following BLAST results are available for this feature:
BLAST of EY710388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP18_ORYSJ5.293e-1940.56Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH2.627e-1838.73Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP19_ORYSJ2.627e-1840.56Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ3.693e-1839.50Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH4.481e-1837.50Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP17_ORYSJ1.220e-1539.29Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ1.594e-1539.16Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH3.550e-1535.77Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-107-D09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710388 ID=EY710388; Name=EY710388; organism=Citrus sinensis; type=EST; length=1028bp
CCACGCGTCCGCTTTCTCTACTCTGCTTCTGGGCTTCCAATTTCTCCAAG
AAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTC
CTCCGTTCATGCTAATGGAGGCGGTGGGTGGATCAATGCTCGTGCCACTT
TCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTAT
GGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCAC
GGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGT
GTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGTCACAGCT
ACCAATTTTTGCCCACCGAACAACGCCCTCCCCAACAATGCATGCGGTTG
GTGCAATCCTCCGCAGCAACAATTTTGATCTCTCTCAGCCTGTGTTCCAA
TAACATTGCTCAATAACAGAGCTGGAGTTGTCCCTGTAACTTTACAAAAA
GGTACCCCTGGCGGAAAAAAGGGAGGCATCAGGTTCACAATCAATGGCCA
TTTCCTAATTCAACCATAATGATGATCTCCAAACGTTGGGGGGGGCTGGG
TGAAAGTTCAGGGCTGATTTCAAATCAAAAGGGACTAAAACTGGGTGGGG
AAACCAGGGTCAAAAAAATTGGGGGGCCAAAACTTGGCAAATATATAACC
TTTTTCTCCTTGGGGCCAAAACTTGGACCTTTTTAAGGTCCAACAAACAG
AGGAGGGGGCCGCCCGTGGGACTATCAAAAAAAGTATTCCCACAAAGAAA
ACAAGGATAATATGGGATCGAAATTTTAACACGGGCTAGACCATATTTTC
CTTTATAATAACAGCAAAAAAAACACTATAAAAAAAGATTGAGGGGATTA
AATACATCATGAATTTTTAAAGCGTCCACAAAAATTATTGTAGGAGAAAG
AAAAAAAGAGAGAAGAAATAAATTAAAGGGAAAAAAAAAGTAAATTGATA
TATTTAAACCCCACATAAAAAGAAGGAG
back to top