EY685163

Overview
NameEY685163
Unique NameEY685163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685163_ssr791 microsatellite EY685163_ssr791:791..802. BLAST: Citrus ESTs to Prunus persica proteins V1
EY685163_ssr659 microsatellite EY685163_ssr659:659..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.132e-16
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSR-THEQHRHLDHQLE 516
            M RGK+Q+++IEN   RQVTF KRR G+LKKA ELS+LC+A++ +IIFS  G+LY+ +++   + L   Y+     Q +  G +R     K E   + ++I  ++   R + G       T E+   L+  LE
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQR--MDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLE 131          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 9.132e-16
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSR-THEQHRHLDHQLE 516
            M RGK+Q+++IEN   RQVTF KRR G+LKKA ELS+LC+A++ +IIFS  G+LY+ +++   + L   Y+     Q +  G +R     K E   + ++I  ++   R + G       T E+   L+  LE
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQR--MDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLE 131          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.558e-15
Identity = 39/81 (48.15%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+ +I +  +RQVTF+KR+ G++KKAYELSVLCD ++A+IIF+   RL++++SS+M + L +Y  Y+E  +   N
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRVLLKYTEYSEPHESRTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.034e-15
Identity = 52/138 (37.68%), Postives = 81/138 (58.70%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQ-KTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            M RGK++++KIEN T+RQVTFSKRRNG++KKA EL+VLCDA+V++++ S   +L+ + S  +  K +   Y+  E   + R   ER  +Q  H     +  +   E+S R  +G DL   T  +   L  ++E  + Q
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEGVDLWRKQWERMQEQ--HRKVLELNSLLRREISRR--MGGDLEGLTLVELSALQQEMEEAIIQ 134          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.010e-14
Identity = 48/139 (34.53%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE-MQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQT 534
            M R K+++K+IEN +SRQVTFSKRRNG+++KA +LS+LC++ +AV++ S  G+LY+ +S + M K ++RY  +  +        E     L  +  N +   + +E+   KL   ++ + + +    L+ QLE  L  T
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHAD--------ELEALDLAEKTRNYLPLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVT 131          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.837e-14
Identity = 53/164 (32.32%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQ----QTSPTIGPDCCYKHGAHLQKGRKD 600
            M RG+ ++K+IEN T RQ TF KRR+G+ KKA EL+VLCDA++ +++FS  G+LY F S  +    E   RY  E            Q+ + E+  +      +E   R +   D    T      L+H LE  ++    +    IG + CY    ++ +GR++
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERY--EATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQ--NIIRGRQE 160          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: PVG4_SCHPO (MADS-box transcription factor pvg4 OS=Schizosaccharomyces pombe GN=pvg4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.234e-12
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLER 324
            M R KI +  I +D SR VTF KR+ G+ KKAYEL+VL D EVAV +  +KGRL+ F SS+ Q+TL++
Sbjct:    1 MGRKKISIAPITDDRSRSVTFVKRKQGLYKKAYELAVLADCEVAVTVIDRKGRLHVFCSSDYQRTLQQ 68          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.591e-12
Identity = 51/142 (35.92%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  127 RGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGME-RYMQQLKHEIANMIE---KIQHI--EVSHRKLLGQDLRS-RTHEQHRHLDHQLEPPLQQ 531
            R KI M KI+ ++ RQVTFSKRR G+ KKA EL  LC AE+ +I+FS   + + F    ++  L+RY        + RN M     QQL+   A   E   ++ HI  EV   K  GQ +   R     R + +  E P+++
Sbjct:   64 RQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRY--------VSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEE 197          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.328e-11
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  127 RGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGM---ERYMQQLKHEIAN-MIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            R KI+M K++N+++ QVTFSKRR+G+ KKA EL  LC AEVA+++FS   +++ F    +   ++R+           N M   E     +  ++ N + + +  +E   +K    D   +  E+ + L +  E P+++
Sbjct:    8 RQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKK---YDELKKIREKTKALGNWWEDPVEE 143          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.970e-11
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  199 GMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSS--EMQKTLERYYRYTEERQIDRNGMERY-MQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLE 516
            G+LKKA EL++LCDA++ VIIFS  G+++EFSS    M++ ++RY      +++  N    Y  QQ+  EI  M  +I  ++ + R   G+DL S T  +   L+ QLE
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRY------QKLSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLE 104          
The following BLAST results are available for this feature:
BLAST of EY685163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MAD26_ORYSJ9.132e-1636.84MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI9.132e-1636.84MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MEF2B_MOUSE1.558e-1548.15Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
CMB2_DIACA2.034e-1537.68MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AGL31_ARATH1.010e-1434.53Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MAD32_ORYSJ3.837e-1432.32MADS-box transcription factor 32 OS=Oryza sativa s... [more]
PVG4_SCHPO1.234e-1254.41MADS-box transcription factor pvg4 OS=Schizosaccha... [more]
AGL61_ARATH3.591e-1235.92Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]
AGL62_ARATH2.328e-1129.50Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]
AP32_ASAEU3.970e-1138.53MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-E09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685163 ID=EY685163; Name=EY685163; organism=Citrus sinensis; type=EST; length=1005bp
CTTTCTTCTTGCCTCTCCATTTTTGTAGAATTTTCTGTTTGGTTTCTGGG
TTGAAATTTTTTTATCTAGAAAAATTTCTGCACGAAAATCTGTTGTCCGG
GTACTTCCCAAATACTGGCCATGGTGAGGGGAAAAATTCAGATGAAGAAA
ATAGAGAATGATACAAGCCGGCAAGTGACATTTTCAAAGCGTCGAAATGG
GATGTTGAAGAAGGCTTACGAGCTTTCGGTTCTTTGCGATGCTGAAGTTG
CTGTTATTATCTTCTCACAGAAAGGAAGGCTCTATGAGTTTTCAAGTTCT
GAAATGCAAAAGACGTTAGAACGATACTATAGATACACAGAAGAAAGGCA
AATTGACAGGAATGGAATGGAGCGATACATGCAGCAATTGAAGCATGAGA
TAGCGAATATGATTGAGAAGATCCAGCATATTGAAGTTTCTCACCGGAAG
CTTTTAGGACAGGACCTGCGTTCCCGTACCCACGAGCAACACCGCCACCT
CGACCACCAGCTCGAACCACCCTTGCAGCAGACATCCCCCACCATCGGAC
CCGACTGCTGTTACAAACATGGTGCGCATTTACAAAAAGGGAGGAAAGAC
CGCAGCCAAACACGAACACACCCCATGATCTGCAGTCGAGAAAACGCCAA
ATAGCCCACACCCCACCCCACCCGCACGCACCCCGACTCCTACGCGGCGG
TAACACGGCTTGACGCCTCGCCCCTGACTACACGCCAGTCCACTGATCCC
ACCCCGACAATCGCCTCCCTCAATGCCAACCCCTCCTGAGCACCCACCCA
CCTCCCATCGCATCCCTATTTATCCGCGCGTACCCTCCGCCCAGCACCCC
ACCTCCATACCCTACCCGAGCAAAACCGACCCCCAACCACGCGACGTCCT
GCCGCTAACATTGCCGGACGAAACAACCCCTCCCCCACGACGCGCTACGA
ACCGCCCGAACACACGCCCACCCACCCCGACTACGACACCCGCCGCGCGC
CTGCA
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