EY685163

Overview
NameEY685163
Unique NameEY685163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685163_ssr791 microsatellite EY685163_ssr791:791..802. BLAST: Citrus ESTs to Prunus persica proteins V1
EY685163_ssr659 microsatellite EY685163_ssr659:659..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.562e-26
Identity = 65/137 (47.45%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQ 528
            M RGK+Q+K+IEN  +RQVTFSKRR+G+LKKA E+SVLCDAEVA+IIFS KG+LYE+++ S M K LERY RY+   ++  +          HE   +  K++ I+   + L+G+DL S   ++ + L+ QLE  L+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLK 137          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.562e-26
Identity = 72/146 (49.32%), Postives = 93/146 (63.70%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERY----YRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQTSPT 543
            M RG++++K+IE   +RQVTF+KRRNG+LKKAYELSVLCDAEVA+IIFS +G+LYEF SSS M KTLERY    Y   E     R  +E   QQ   ++    E +Q    S R LLG+DL     ++   L+ QL+  L+Q   T
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQR---SQRNLLGEDLGPLNSKELESLERQLDMSLKQIRST 143          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.346e-26
Identity = 60/130 (46.15%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  127 RGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLE 516
            RGKI++K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE++++ ++ T+ERY +   +     +  E   Q  + E + + ++I  I+ ++R ++G+ L S T    + L+ +LE
Sbjct:   19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLE 148          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.369e-26
Identity = 63/139 (45.32%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERY--YRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQ 528
            M RG++Q+K+IEN  +RQVTFSKRR+G+LKKA+E+SVLCDAEVA++IFS KG+L+E+S+ S M+K LERY  Y Y++++ + R+  +     L+H  A +  +++ +E + R  +G+DL S + ++ + L+HQL   ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEH--AKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIK 137          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.369e-26
Identity = 62/139 (44.60%), Postives = 103/139 (74.10%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERY--YRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQ 528
            M RG++Q+K+IEN  +RQVTFSKRR+G+LKKA+E+SVLCDAEVA+I+FS KG+L+E+S+ S M++ LERY  Y Y++++ + R+  +     L+H  A +  +++ +E + R  +G+DL S + ++ + L+HQL+  ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEH--AKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIK 137          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.369e-26
Identity = 60/130 (46.15%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  127 RGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLE 516
            RGKI++K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA++IFS +GRLYE++++ ++ T+ERY +   +        E   Q  + E + +  +I+ I+  +R +LG+ L S   ++ ++L+ +LE
Sbjct:   18 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLE 147          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.453e-26
Identity = 62/138 (44.93%), Postives = 93/138 (67.39%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            M RG++++K+IEN  +RQVTF+KRRNG+LKKAYELSVLCDAEV++I+FS +G+LYEF S+S M KTLERY + +       N   + ++    E   +  + ++++   R LLG+DL     ++   L+ QL+  L+Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQ 138          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.453e-26
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQ 528
            M RGK+Q+K+IEN  +RQVTFSKRR+G+LKKA E+SVLCDAEVA+IIFS KG+LY++++ S M K LERY RY+   ++  +          HE   +  K++ I+   + L+G+DL S   ++ + L+ QLE  L+
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLK 137          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.734e-26
Identity = 57/130 (43.85%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  127 RGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLE 516
            RGKI++K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE++++ ++ T+ERY +   +     +  E   Q  + E + +  +I +++  +R +LG+ L + +    ++L+ ++E
Sbjct:   19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIE 148          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.734e-26
Identity = 58/130 (44.62%), Postives = 90/130 (69.23%), Query Frame = 1
Query:  127 RGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLE 516
            RGKI++K+IEN T+RQVTF KRRNG+LKKAYELSVLCDAEVA+I+FS +GRLYE++++ ++ T+ERY +   +     +  E   Q  + E + +  +I +++  +R  LG+ L +      R+L+ ++E
Sbjct:   19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIE 148          
The following BLAST results are available for this feature:
BLAST of EY685163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MAD14_ORYSJ2.562e-2647.45MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL9_SOLLC2.562e-2649.32Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
AG_PANGI3.346e-2646.15Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AGL8_SINAL4.369e-2645.32Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_ARATH4.369e-2644.60Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL5_ARATH4.369e-2646.15Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
SEP2_ARATH7.453e-2644.93Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MAD14_ORYSI7.453e-2646.72MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AG_TOBAC9.734e-2643.85Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY9.734e-2644.62Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-E09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685163 ID=EY685163; Name=EY685163; organism=Citrus sinensis; type=EST; length=1005bp
CTTTCTTCTTGCCTCTCCATTTTTGTAGAATTTTCTGTTTGGTTTCTGGG
TTGAAATTTTTTTATCTAGAAAAATTTCTGCACGAAAATCTGTTGTCCGG
GTACTTCCCAAATACTGGCCATGGTGAGGGGAAAAATTCAGATGAAGAAA
ATAGAGAATGATACAAGCCGGCAAGTGACATTTTCAAAGCGTCGAAATGG
GATGTTGAAGAAGGCTTACGAGCTTTCGGTTCTTTGCGATGCTGAAGTTG
CTGTTATTATCTTCTCACAGAAAGGAAGGCTCTATGAGTTTTCAAGTTCT
GAAATGCAAAAGACGTTAGAACGATACTATAGATACACAGAAGAAAGGCA
AATTGACAGGAATGGAATGGAGCGATACATGCAGCAATTGAAGCATGAGA
TAGCGAATATGATTGAGAAGATCCAGCATATTGAAGTTTCTCACCGGAAG
CTTTTAGGACAGGACCTGCGTTCCCGTACCCACGAGCAACACCGCCACCT
CGACCACCAGCTCGAACCACCCTTGCAGCAGACATCCCCCACCATCGGAC
CCGACTGCTGTTACAAACATGGTGCGCATTTACAAAAAGGGAGGAAAGAC
CGCAGCCAAACACGAACACACCCCATGATCTGCAGTCGAGAAAACGCCAA
ATAGCCCACACCCCACCCCACCCGCACGCACCCCGACTCCTACGCGGCGG
TAACACGGCTTGACGCCTCGCCCCTGACTACACGCCAGTCCACTGATCCC
ACCCCGACAATCGCCTCCCTCAATGCCAACCCCTCCTGAGCACCCACCCA
CCTCCCATCGCATCCCTATTTATCCGCGCGTACCCTCCGCCCAGCACCCC
ACCTCCATACCCTACCCGAGCAAAACCGACCCCCAACCACGCGACGTCCT
GCCGCTAACATTGCCGGACGAAACAACCCCTCCCCCACGACGCGCTACGA
ACCGCCCGAACACACGCCCACCCACCCCGACTACGACACCCGCCGCGCGC
CTGCA
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