EY685163

Overview
NameEY685163
Unique NameEY685163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685163_ssr791 microsatellite EY685163_ssr791:791..802. BLAST: Citrus ESTs to Prunus persica proteins V1
EY685163_ssr659 microsatellite EY685163_ssr659:659..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.380e-18
Identity = 52/133 (39.10%), Postives = 85/133 (63.91%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLE 516
            M RGKIQ+K+IEN T+RQVT+SKRRNG+ KKA+EL+VLCDA V++I+FS   +L+E+ S +   K +   Y+   +  +     ER MQ+ K +   ++E  +++    ++ LG+ L     ++ R L+ ++E
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYER-MQETKRK---LLETNRNLRTQIKQRLGECLDELDIQELRRLEDEME 129          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.720e-18
Identity = 47/133 (35.34%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  127 RGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPL 525
            R +I +++I+N  +RQVTFSKRR G+ KKA ELS+LCDAEV +++FS  G+L++F+S+ M++ ++RY  +++  Q           +     A + E++    +  R++ G++L     EQ + L+  LE  L
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGL 154          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.757e-18
Identity = 49/142 (34.51%), Postives = 90/142 (63.38%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEE-RQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQTSPT 543
            M R + ++K+IE+  +RQVTFSKRR G+ KKA ELSVLCDA+VA+I+FS  G+L  F+SS M + +++Y  ++    + ++  ++  ++  K+  A++ E++    +  R++ G++L   + ++ + L+  LE  L +   T
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKY--AHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLT 140          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.174e-17
Identity = 48/139 (34.53%), Postives = 90/139 (64.75%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF--SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            M RGKI++K+IEN T+RQVT+SKRR G++KKA EL+VLCDA+VA+I+FS  G+ +EF   S++++   +RY     ++ I  +      + ++  ++++ +  +++    R+ +G+DL     ++ R L+  ++  L++
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRY-----QQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKE 134          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.708e-17
Identity = 53/147 (36.05%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEV----SHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQTSPTIG 549
            M R KIQ+ +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIFS   +LY+++S++M + L +Y  Y E  +   N              N+IEK     V    S        L  RT  ++  +D + +  +Q+    IG
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKYTEYNEPHESLTN-------------KNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQMAIG 134          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.708e-17
Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGM--ERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRS 474
            M RGKI++K+IEN T+RQVTFSKRR G+LKKA E+ VLCDAEV V+IFS  G+L ++ + +         R  E+ Q +   +  +   + L  EI  + ++  ++++  R + G+DL S
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNS 120          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.324e-17
Identity = 49/139 (35.25%), Postives = 88/139 (63.31%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEF--SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            M RGKI++K+IEN  +R VTFSKRRNG++KKA E++VLCDA+VA+IIF+  G++ ++   S ++   L++Y + + ++  D        + L +EI  + ++   +++  R L G+D++S   +    ++H +E  L +
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAK-----HENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDK 134          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.260e-17
Identity = 53/139 (38.13%), Postives = 85/139 (61.15%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSE-MQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQT 534
            M R K+++K+IEN +SRQVTFSKRRNG+++KA +LSVLCDA VA+++ S  G+LY FSS + + K L+   RY ++   D   ++   + L     N     + +E+   KL+G ++++ + +    L+  LE  L  T
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILD---RYGKQHADDLKALDHQSKAL-----NYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVT 131          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.260e-17
Identity = 49/136 (36.03%), Postives = 85/136 (62.50%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQ 528
            M RGKIQ+K+IEN T+RQVT+SKRRNG+ KKA+ELSVLCDA+V++I+ S   +L+E+  S    T + + +Y +   +D      + ++++  +  + E  +++    R+ +G+ L    +EQ  +L   ++  L+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEY-ISPTTATKQLFDQYQKAVGVDL--WSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLK 133          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.840e-16
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS-SEMQKTLERYYRYT 339
            M RGKIQ+K+IEN   RQVTF KRR G+LKKA ELSVLCDAE+ V+IFS +G+L+E ++   M+  +++Y + T
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCT 74          
The following BLAST results are available for this feature:
BLAST of EY685163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AP3_ARATH4.380e-1839.10Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD47_ORYSJ5.720e-1835.34MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD22_ORYSJ9.757e-1834.51MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD16_ORYSJ2.174e-1734.53MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MEF2_DROME3.708e-1736.05Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MADS4_ORYSJ3.708e-1740.83MADS-box transcription factor 4 OS=Oryza sativa su... [more]
PIST_ARATH6.324e-1735.25Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
FLC_ARATH8.260e-1738.13MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
DEFA_ANTMA8.260e-1736.03Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AGL12_ARATH1.840e-1656.76Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-E09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685163 ID=EY685163; Name=EY685163; organism=Citrus sinensis; type=EST; length=1005bp
CTTTCTTCTTGCCTCTCCATTTTTGTAGAATTTTCTGTTTGGTTTCTGGG
TTGAAATTTTTTTATCTAGAAAAATTTCTGCACGAAAATCTGTTGTCCGG
GTACTTCCCAAATACTGGCCATGGTGAGGGGAAAAATTCAGATGAAGAAA
ATAGAGAATGATACAAGCCGGCAAGTGACATTTTCAAAGCGTCGAAATGG
GATGTTGAAGAAGGCTTACGAGCTTTCGGTTCTTTGCGATGCTGAAGTTG
CTGTTATTATCTTCTCACAGAAAGGAAGGCTCTATGAGTTTTCAAGTTCT
GAAATGCAAAAGACGTTAGAACGATACTATAGATACACAGAAGAAAGGCA
AATTGACAGGAATGGAATGGAGCGATACATGCAGCAATTGAAGCATGAGA
TAGCGAATATGATTGAGAAGATCCAGCATATTGAAGTTTCTCACCGGAAG
CTTTTAGGACAGGACCTGCGTTCCCGTACCCACGAGCAACACCGCCACCT
CGACCACCAGCTCGAACCACCCTTGCAGCAGACATCCCCCACCATCGGAC
CCGACTGCTGTTACAAACATGGTGCGCATTTACAAAAAGGGAGGAAAGAC
CGCAGCCAAACACGAACACACCCCATGATCTGCAGTCGAGAAAACGCCAA
ATAGCCCACACCCCACCCCACCCGCACGCACCCCGACTCCTACGCGGCGG
TAACACGGCTTGACGCCTCGCCCCTGACTACACGCCAGTCCACTGATCCC
ACCCCGACAATCGCCTCCCTCAATGCCAACCCCTCCTGAGCACCCACCCA
CCTCCCATCGCATCCCTATTTATCCGCGCGTACCCTCCGCCCAGCACCCC
ACCTCCATACCCTACCCGAGCAAAACCGACCCCCAACCACGCGACGTCCT
GCCGCTAACATTGCCGGACGAAACAACCCCTCCCCCACGACGCGCTACGA
ACCGCCCGAACACACGCCCACCCACCCCGACTACGACACCCGCCGCGCGC
CTGCA
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