EY685163

Overview
NameEY685163
Unique NameEY685163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.403e-16
Identity = 39/81 (48.15%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+++I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.403e-16
Identity = 39/81 (48.15%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+++I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.403e-16
Identity = 39/81 (48.15%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+++I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.403e-16
Identity = 39/81 (48.15%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+++I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.403e-16
Identity = 50/159 (31.45%), Postives = 93/159 (58.49%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYT-------EERQIDRN--------------GMERYMQQLKH-EIANMIEKIQHIEVSHRKLLGQDLRSRTHEQHRHLDHQLEPPLQQ 531
            M R + ++++IE+  +RQVTFSKRR G+ KKA EL+VLCDA+VA+++FS  G+L +F+SS M + +++Y  ++       ++  ID N                   + QL+H + +++ E++    +  R++ G++L   + E+ + ++  LE  LQ+
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQR 159          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.099e-16
Identity = 39/81 (48.15%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+ +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESGTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.354e-16
Identity = 39/81 (48.15%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+ +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.354e-16
Identity = 39/81 (48.15%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+ +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.354e-16
Identity = 39/81 (48.15%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+ +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
BLAST of EY685163 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.354e-16
Identity = 39/81 (48.15%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  121 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSEMQKTLERYYRYTEERQIDRN 363
            M R KIQ+ +I ++ +RQVTF+KR+ G++KKAYELSVLCD E+A+IIF+   +L++++S++M K L +Y  Y E  +   N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTN 81          
The following BLAST results are available for this feature:
BLAST of EY685163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MEF2D_XENLA2.403e-1648.15Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT2.403e-1648.15Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE2.403e-1648.15Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN2.403e-1648.15Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MAD55_ORYSJ2.403e-1631.45MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MEF2A_PIG4.099e-1648.15Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_XENLA5.354e-1648.15Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT5.354e-1648.15Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB5.354e-1648.15Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE5.354e-1648.15Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-E09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685163 ID=EY685163; Name=EY685163; organism=Citrus sinensis; type=EST; length=1005bp
CTTTCTTCTTGCCTCTCCATTTTTGTAGAATTTTCTGTTTGGTTTCTGGG
TTGAAATTTTTTTATCTAGAAAAATTTCTGCACGAAAATCTGTTGTCCGG
GTACTTCCCAAATACTGGCCATGGTGAGGGGAAAAATTCAGATGAAGAAA
ATAGAGAATGATACAAGCCGGCAAGTGACATTTTCAAAGCGTCGAAATGG
GATGTTGAAGAAGGCTTACGAGCTTTCGGTTCTTTGCGATGCTGAAGTTG
CTGTTATTATCTTCTCACAGAAAGGAAGGCTCTATGAGTTTTCAAGTTCT
GAAATGCAAAAGACGTTAGAACGATACTATAGATACACAGAAGAAAGGCA
AATTGACAGGAATGGAATGGAGCGATACATGCAGCAATTGAAGCATGAGA
TAGCGAATATGATTGAGAAGATCCAGCATATTGAAGTTTCTCACCGGAAG
CTTTTAGGACAGGACCTGCGTTCCCGTACCCACGAGCAACACCGCCACCT
CGACCACCAGCTCGAACCACCCTTGCAGCAGACATCCCCCACCATCGGAC
CCGACTGCTGTTACAAACATGGTGCGCATTTACAAAAAGGGAGGAAAGAC
CGCAGCCAAACACGAACACACCCCATGATCTGCAGTCGAGAAAACGCCAA
ATAGCCCACACCCCACCCCACCCGCACGCACCCCGACTCCTACGCGGCGG
TAACACGGCTTGACGCCTCGCCCCTGACTACACGCCAGTCCACTGATCCC
ACCCCGACAATCGCCTCCCTCAATGCCAACCCCTCCTGAGCACCCACCCA
CCTCCCATCGCATCCCTATTTATCCGCGCGTACCCTCCGCCCAGCACCCC
ACCTCCATACCCTACCCGAGCAAAACCGACCCCCAACCACGCGACGTCCT
GCCGCTAACATTGCCGGACGAAACAACCCCTCCCCCACGACGCGCTACGA
ACCGCCCGAACACACGCCCACCCACCCCGACTACGACACCCGCCGCGCGC
CTGCA
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