EY710384

Overview
NameEY710384
Unique NameEY710384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1016
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_ACAM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acaryochloris marina (strain MBIC 11017) GN=dxr PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.039e-12
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K I++LGSTGSIGTQTLDIVA++ D+FR+V +AAG NI LL+ Q+++F P +
Sbjct:    2 KAITLLGSTGSIGTQTLDIVAQYPDQFRIVGMAAGRNIELLSQQIRQFRPEI 53          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_BACHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus halodurans GN=dxr PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.791e-11
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEP 439
            K ISVLG+TGSIGTQTLD++A H DKFR+VA++ G N+TL  +Q+ +F+P
Sbjct:    2 KGISVLGATGSIGTQTLDVLANHRDKFRLVAMSVGKNLTLAEEQIHQFKP 51          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_PROM9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9312) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.339e-11
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K I+VLGSTGSIGTQTL+I +E  DKF+ VAL+AG NITLL +QVK  +P V
Sbjct:    2 KYITVLGSTGSIGTQTLEIASEQPDKFKAVALSAGRNITLLTEQVKTHKPEV 53          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_THEEB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.211e-11
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K +++LGSTGSIGTQTLDIVA++ D+FRVV LAAG N+  L  Q+++F+P +
Sbjct:   20 KALNLLGSTGSIGTQTLDIVAQYPDRFRVVGLAAGRNLERLIPQIRQFQPEI 71          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_SYNJA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxr PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.211e-11
Identity = 32/50 (64.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:  296 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            I++LGSTGSIGTQTLD+VA++ ++FRVV L + SN+TLLA+QV RF P +
Sbjct:    4 ITLLGSTGSIGTQTLDLVAQYPERFRVVGLTSYSNVTLLAEQVWRFRPQI 53          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_SYNP6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxr PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K +++LGSTGSIGTQTLDI+ ++ D+FR+V LAAG N+ LL++Q++R  P +
Sbjct:    2 KAVTLLGSTGSIGTQTLDILEQYPDRFRLVGLAAGRNVALLSEQIRRHRPEI 53          
BLAST of EY710384 vs. ExPASy Swiss-Prot
Match: DXR_SYNE7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus elongatus (strain PCC 7942) GN=dxr PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  290 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFEPHV 445
            K +++LGSTGSIGTQTLDI+ ++ D+FR+V LAAG N+ LL++Q++R  P +
Sbjct:    2 KAVTLLGSTGSIGTQTLDILEQYPDRFRLVGLAAGRNVALLSEQIRRHRPEI 53          
The following BLAST results are available for this feature:
BLAST of EY710384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DXR_ACAM18.039e-1261.541-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACHD1.791e-1162.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM92.339e-1167.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEEB5.211e-1159.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNJA5.211e-1164.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNP68.888e-1155.771-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNE78.888e-1155.771-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-107-D02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710384 ID=EY710384; Name=EY710384; organism=Citrus sinensis; type=EST; length=1016bp
AACTTGTGTTGAGAGAGAGAGATAAAAAGAGGAGAAAAAAAAAAAGGTTG
TTAAAGCTTTGATGGCATTGAATTTGCAGATCCCAGCTGAAATCAAGGCT
CTCTCTTTCTTGGAGACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTC
AGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGTTTGGTA
GAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGA
GCTGTTACAGAGACTTTTCGTAAGACTTGAGAAGGTCCAAAGCCAATCTC
AGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTG
CGGAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGATCAAAT
ATAACTCTTCTTGCTGATCAGGTGAAGAGATTCGAACCTCACGTACATTG
CTGATAACAATGAGTCATTACTTGCAGAAATCAAGGAGGCATTGGCTAAT
GTTGAATACAAGCCCAAGATTTTGAGCTGGGGAAAGGGAGTCATTGAAGC
TTAGCTGACACCCATAGCTTGCGACGTGAGGTCATAGTATATCCGTTGAT
GTCGATTGAAAGCAAGAGTTGCTAGAGAGTACTAAGATCAGAATGAATTA
GGCAGAAAAGAGAAATATATGACATGGGTATGTTGTCATATCTAGATTAC
AAGTAGATATAAATAAAACAGAAGACGAGAAATGCATCACCTGACGGAAG
GAGGTGTACGAGAGGAGATATCAAGTATATATACTGAAGGAGGATGATAG
AAACTGGAGAATAGAGCAACGTGGTACGAAGTAAAAGATAAGAATAAACG
ATAATAGAGGAATAGAGAAAACATACCTATACTAATGAAGGAAGAAAGAT
GATGAAAAACGATTAAATGAAATCAACTAGGGCGTGTATAGAAGAGCGGT
GATCTTATTATCGTGTGACAAGAAAATCTATACGTGGCAGACGGTTGACG
AAGAATCACGAGAACG
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